Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00408 ATGAAAATATGGTGTCTATTTTTGAGACTTGAAGCTTACTCAAACAATCCCACCAAAAATCTGCTGCAACTCTGTACCGCATCCAAACTACAGTTAGAACTACTAAGATTCAAAGCTGTACTTCAAATTGCTCAGCAGCAACCAAAGCAAGCTATAGAGACCTACAGAACCTTGTTAACAGTAATAACAGCCAAAAAGGAGCTTTTGCTTCAAGCCAAGAACTCCGAGTTTGATCAAGCAAAAATTTTCAAGGATGAGGCATTAACGGCGCGAAAGTTGGAAATAGAAGCATGGCAGGATTTGGCAACAATTTATACAGATCTTAATTCCTTTCTTAATGCAAAAGCTTGTGTTGACAAAGCCCAATTACTTGAGTTTTTCTCTCCGAGAAGTTGGCATGTTACAGGGAAGTTGTTTGAAGCTCAATCATTAAACAAGGAAGCTTTTATTTCGTATTCAATCTCATTGTCAATAGAACCTGATTATATTCCTAGTATCAATTCAACTGCAAAGTTGTTGATTAACCTTGGTATGGAATCACTTCCATTGGCAAGAAGCTTTTTAATGAATGCTTTGCGATTAGAACCTACAAACTATGATGCGTGGTTCAATCTTGGAGTGGTTTCGAAAATGGAAGGTTCGTTACAACAAGCAGCAGATTGCTTTCAAGCTGCATATGAGTTGTCGCTTTCAAATCCAGTGCAAAAGTTTGAGTGA 717 0.378 MKIWCLFLRLEAYSNNPTKNLLQLCTASKLQLELLRFKAVLQIAQQQPKQAIETYRTLLTVITAKKELLLQAKNSEFDQAKIFKDEALTARKLEIEAWQDLATIYTDLNSFLNAKACVDKAQLLEFFSPRSWHVTGKLFEAQSLNKEAFISYSISLSIEPDYIPSINSTAKLLINLGMESLPLARSFLMNALRLEPTNYDAWFNLGVVSKMEGSLQQAADCFQAAYELSLSNPVQKFE 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00408 238 Gene3D Tetratricopeptide repeat domain 10 235 IPR011990 GO:0005515
Trre1g00408 238 Pfam Tetratricopeptide repeat 96 122 IPR019734 GO:0005515
Trre1g00408 238 SUPERFAMILY TPR-like 33 229 IPR011990 GO:0005515
Trre1g00408 238 PANTHER PROTEIN NPG1 26 238 IPR043376 -
Trre1g00408 238 SMART tpr_5 129 162 IPR019734 GO:0005515
Trre1g00408 238 SMART tpr_5 199 232 IPR019734 GO:0005515
Trre1g00408 238 SMART tpr_5 95 128 IPR019734 GO:0005515
Trre1g00408 238 SMART tpr_5 32 65 IPR019734 GO:0005515
Trre1g00408 238 ProSiteProfiles TPR repeat profile. 199 232 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00408 Trre-Chr1 2926664 2927786 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00408 31 237 Calmodulin-binding Proteins AT1G27460 50.725 1.24e-62 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00408 K21843 - gmx:100799086 323.168