Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00406 ATGTTGTGTGCTTGTTCTGGAGAGCAGTACAAGTTTGAAGAGGCTCCACAGTCACCGGATTCCCTAACAACAAGGGATTTCTCTGCCAGTGGACTATCTTCAAGAACTGGAGATTGGGATTCCAGATTGAATGACAATCAAGTTGAAGATGTTGAAGCTACTCTAAAAGAAGCTATCTCATTAACCTATGAGGAAGCTAGAGCTTTGTTGGGGAGGGTTGAATATCAAAAAGGGAACTTTGCGGCCGCCCTTCAAGTGATTCAGGGTATTGATATCAGTTCTTTGACCCCAAGGATGATCAGAGCTATATCTGAAACAAACAAGCTAAGAAAACCTCGTTCGAAGGCGGTTACTGTGCTTCCTAATTTGATGTCCATGCATTCAGTAAGCCTGCTAATTGAGGCAATTTTGCTTAAAGCCAAATCCTTAGAGGAACTTGAGCGACCCGAAGAGGCTGCAAAGGAGTGCAGAATAATTCTGGATACAGTTGAATCAGCTCTTCCTAATGGAATGCCTGATGGTATAGGTGAAGACTGCAAGTTGCAGGAATGGTTTCACAGAGCATTGGAGTTGCTTCCAAATCTATGGATCAAGGCAGGTTTTCTAGATGAAGCTGTCACGGCTTATCGGCGTGCTCTGGTCAAGCCATGGAATTTGGAGCCAAGGAGGTTGGCATGTCTACAAAAGGATTTAGCTACCACACTACTCTATGGTGGTGTTGAAGTAAACCTACCTTCTGACTTACAAGTGAATGGTCCAACAAAACCAATGAGTAACATTGAAGAAGCGATACTTTTGTTACTGATACTATCAGGAAAGATGGCACTTCAAGAAATAGATTATGATGCTGAAATAACTGATCATCTTACATTTGCACTTTCAGTTACGGGGATGTTTGAACCTTTGGCAAAGTGTGTAGAGCAGATCCTACCAGGTATCTTCGGTCGAGCCGAGAGGTGGTACTTTCTCGCTCTTTGTTACAGCGCCGCAGGACAGAATGAAGCAGCGTTAAACCTTTTGAGAAAAGCTTGTGGTAGTTCTGAATCAGAGCATATACCTCATTTTGCTTCATATTTGTTTGGTGCAAAGCTGTGTTCCCAAAATCCAATTCATGCTCATGAAGGCATCAAATTTTCAAAGCAAGTTATTGATCTAGCCAAGAATCAAAATGAGCATTTTTTGGTTCAGGGCCAACACATTCTCGGTGTTTGTTACGGGGCTGCAGCTAGAACATCTGTAGTGGATTCTGAAAGAATTATATTTCAAAACGAGTCTTTGAACTTTCTAAACAAAGCTGCTATAACTGGAAGCGATGATGCAGAAGTGATTTTCAGCCTTGGACTGGAAAATGCAGTTCAGAGGAATCTAGATGCAGCTTATCAAAACATAATGAGGTACTCAGATATGACAGCTGGAAGTTCTACAAGAGGTTGGCGGCTGTTAGCGCTCATCGTGTCCGCACAACAGAGGTTTAAGGATGCAGAAGCTATTGTTGATTTTGCTTTAGATGACGCTGGTAGCCTAGATCAGTTAGAACTACTAAGATTCAAAGCTGTACTTCAAATTGCTCAGCAGCAACCAAAGCAAGCTATAGAGACCTACAGAACCTTGTTAACAGTAATAACAGCCAAAAAGGAGCTTTTGCTTCAAGCCAAGAACTCCGAGTTTGATCAAGCAAAAATTTTCAAGGATGAGGCATTAACGGCGCGAAAGTTGGAAATAGAAGCATGGCAGGATTTGGCAACAATTTATACAGATCTTAATTCCTTTCTTAATGCAAAAGCTTGTGTTGACAAAGCCCAATTACTTGAGTTTTTCTCTCCGAGAAGTTGGCATGTTACAGGGAAGTTGTTTGAAGCTCAATCATTAAACAAGGAAGCTTTTATTTCGTATTCAATCTCATTGTCAATAGAACCTGATTATATTCCTAGTATCAATTCAACTGCAAAGTTGTTGATTAACCTTGGTATGGAATCACTTCCATTGGCAAGAAGCTTTTTAATGAATGCTTTGCGATTAGAACCTACAAACTATGATGCGTGGTTCAATCTTGGAGTGGTTTCGAAAATGGAAGGTTCGTTACAACAAGCAGCAGATTGCTTTCAAGCTGCATATGAGTTGTCGCTTTCAAATCCAGTGCAAAAGTTTGAGTGA 2154 0.4109 MLCACSGEQYKFEEAPQSPDSLTTRDFSASGLSSRTGDWDSRLNDNQVEDVEATLKEAISLTYEEARALLGRVEYQKGNFAAALQVIQGIDISSLTPRMIRAISETNKLRKPRSKAVTVLPNLMSMHSVSLLIEAILLKAKSLEELERPEEAAKECRIILDTVESALPNGMPDGIGEDCKLQEWFHRALELLPNLWIKAGFLDEAVTAYRRALVKPWNLEPRRLACLQKDLATTLLYGGVEVNLPSDLQVNGPTKPMSNIEEAILLLLILSGKMALQEIDYDAEITDHLTFALSVTGMFEPLAKCVEQILPGIFGRAERWYFLALCYSAAGQNEAALNLLRKACGSSESEHIPHFASYLFGAKLCSQNPIHAHEGIKFSKQVIDLAKNQNEHFLVQGQHILGVCYGAAARTSVVDSERIIFQNESLNFLNKAAITGSDDAEVIFSLGLENAVQRNLDAAYQNIMRYSDMTAGSSTRGWRLLALIVSAQQRFKDAEAIVDFALDDAGSLDQLELLRFKAVLQIAQQQPKQAIETYRTLLTVITAKKELLLQAKNSEFDQAKIFKDEALTARKLEIEAWQDLATIYTDLNSFLNAKACVDKAQLLEFFSPRSWHVTGKLFEAQSLNKEAFISYSISLSIEPDYIPSINSTAKLLINLGMESLPLARSFLMNALRLEPTNYDAWFNLGVVSKMEGSLQQAADCFQAAYELSLSNPVQKFE 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00406 717 SUPERFAMILY TPR-like 133 386 IPR011990 GO:0005515
Trre1g00406 717 ProSiteProfiles TPR repeat profile. 678 711 IPR019734 GO:0005515
Trre1g00406 717 SMART tpr_5 608 641 IPR019734 GO:0005515
Trre1g00406 717 SMART tpr_5 574 607 IPR019734 GO:0005515
Trre1g00406 717 SMART tpr_5 678 711 IPR019734 GO:0005515
Trre1g00406 717 SMART tpr_5 133 166 IPR019734 GO:0005515
Trre1g00406 717 SMART tpr_5 317 350 IPR019734 GO:0005515
Trre1g00406 717 SMART tpr_5 511 544 IPR019734 GO:0005515
Trre1g00406 717 MobiDBLite consensus disorder prediction 16 38 - -
Trre1g00406 717 Gene3D Tetratricopeptide repeat domain 370 548 IPR011990 GO:0005515
Trre1g00406 717 Pfam Tetratricopeptide repeat 575 601 IPR019734 GO:0005515
Trre1g00406 717 Pfam Tetratricopeptide repeat 317 347 IPR019734 GO:0005515
Trre1g00406 717 SUPERFAMILY TPR-like 551 710 IPR011990 GO:0005515
Trre1g00406 717 Gene3D Tetratricopeptide repeat domain 549 716 IPR011990 GO:0005515
Trre1g00406 717 PANTHER PROTEIN NPG1 1 717 IPR043376 -
Trre1g00406 717 Gene3D Tetratricopeptide repeat domain 18 350 IPR011990 GO:0005515
Trre1g00406 717 SUPERFAMILY TPR-like 424 601 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00406 Trre-Chr1 2909966 2913762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00406 1 716 Calmodulin-binding Proteins AT1G27460 56.944 0.0 813
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00406 K21843 - gmx:100799086 1100.12