Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00380 ATGCAAAGATCAATATGGTTACCATTGTCCAACTCCTTAATGGATCATCCAATTCCAATCCAATCTCACTCTTTTGGGTGGCATGACACTTGTGCCTTGCTTCTTGCTACTCTCTCCATTTATTTTTGTGTTTCAGCTAGTCTATTATATGGATTTTATGGAGATTCTCGTTTGATTCTTGGTCCAAGTTCATCACGTTTGATAAAAACAAGTTCACTTTTTGTTCAACAAATTGAAGTGACAAATAATTATATTACTAATAATGATGATATTCATCTTTATGCTTTCAATAATAAACCTGAATTAAGTTCTCAAATAAATTGGACTACATCAAAGTTTTTAGTTGTTGAAGCATATACTCGCAAGGGAGTTTCTTTGTGGTTAAATAAAGGCTCCACTATTTGTTTGAGGTGGGAAGCAGATGCTAGTAGTTTAAATCAACTTGAAGGGGTGGTGATTAAAGGAGAAAGAAGGCTAGAAAAACTAAAGCCTAAACAAACTACCTTCTCTGAGGCAATGCCAATTGCTGTTAGAGAGACTGAAAATGGTAAAGAAGCTGAATACATTGTTGAGGAAGATGATAGGTACCACATTGGTATTCTAAACATGAATGCTAGGAACATAATTTTGACCATGAATGTCAATGTTTCTGCAAAGATATATGATACTACCAAAGCCACAAATATGTGCTCTACTGGGAATGGATCATGCAAACTTGGCGTTTTTTTCCCTATCACATATTATGTAATTCTAACAAAACCAAAAAATGGAAATGATGATGAAGCATGGTATGTTGAAATTTCTTTTATCGCTCGGATTTTTTCCTACATAATGCTCTTAGGAATTTTCATGATTGTCATTTTTATAATATTGAAATGCCTTGGAGCCGGTGATAATCACAATTTAGATGAAGATCAAGAAGTAACTGAAACCCAACCTCTAATGCAGCCAAATCCAATAACATATGGAACAAATAAATTTCATGAAAAGGAAGAAGAATCAGATGCATCAAGTAGCTCTTCAGAGGAGTTGTATAATGAAAAATTATGTATAATTTGTTATGATGAACAACGTAACTGTTTCTTTGTTCCTTGTGGTCATTGTGCCACTTGCTATGACTGTGCGCAAAGGATTATGGATGGGGAGAGCAAAGTTTGTCCCGTATGCCGGAGACTTCTTCATAAAGTAAGAAGATTATTCAATAGTTAA 1209 0.3441 MQRSIWLPLSNSLMDHPIPIQSHSFGWHDTCALLLATLSIYFCVSASLLYGFYGDSRLILGPSSSRLIKTSSLFVQQIEVTNNYITNNDDIHLYAFNNKPELSSQINWTTSKFLVVEAYTRKGVSLWLNKGSTICLRWEADASSLNQLEGVVIKGERRLEKLKPKQTTFSEAMPIAVRETENGKEAEYIVEEDDRYHIGILNMNARNIILTMNVNVSAKIYDTTKATNMCSTGNGSCKLGVFFPITYYVILTKPKNGNDDEAWYVEISFIARIFSYIMLLGIFMIVIFIILKCLGAGDNHNLDEDQEVTETQPLMQPNPITYGTNKFHEKEEESDASSSSSEELYNEKLCIICYDEQRNCFFVPCGHCATCYDCAQRIMDGESKVCPVCRRLLHKVRRLFNS 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00380 402 Pfam Zinc finger, C3HC4 type (RING finger) 347 394 - -
Trre1g00380 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 324 401 IPR013083 -
Trre1g00380 402 SMART ring_2 350 389 IPR001841 -
Trre1g00380 402 Pfam Domain of unknown function (DUF4792) 92 159 IPR032008 -
Trre1g00380 402 SUPERFAMILY RING/U-box 340 396 - -
Trre1g00380 402 PANTHER OS05G0521000 PROTEIN 30 401 - -
Trre1g00380 402 Pfam Domain of unknown function (DUF4793) 186 289 IPR032010 -
Trre1g00380 402 ProSiteProfiles Zinc finger RING-type profile. 350 390 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00380 Trre-Chr1 2718185 2720840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00380 291 400 C3H Transcription Factor Family AT1G62370 29.310 3.43e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00380 - - psat:127093067 635.565