Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00379 ATGGCTGATCAAGAAAACACTATCCCCACGCGCCGCCCTCAACGTGAAGCAAAGATAAGAGCAGTAGCTGCACTTTGTGAACAGCGCAAAAGGAAGCGCGTTGAGCGCGTGGAGCGTGTTGCTCTCGGTGATTTAACTAACACATCGGCGAAACATTTTTCTGATATTCATAAACAGAAAAAGAGAAACACTGCCAAATCGAAGTCCGTTGAAGAATCTCCGGTACCGGAAATTTTGGAAGTGAAATCGGAAGATCCTCAGTTATGTGGGCCTTATGTTTCCGATATTTACGATTACCTTCGTAATTTAGAGGTTGATCCTAGTAAAAGACCTTTGTCTGATTATATCATGAAAGTTCAGAGGGATGTTAATTCTAGTATGAGGGGTGTTCTTGTGGATTGGTTGGTTGAAGTTGCTGAAGAATACAAGCTTGTTTCGGATACCCTTTATTTTGCTGTTTCATACATTGATAGGTTTCTGTCTTTGAATGATTTAAGTAGACAGAAGTTGCAATTGCTTGGTGTTTCTTCAATGCTGATTGCTTCAAAATATGAGGAGATTAAGCCACCTGAGGTGGAGGACTTTTGCTACATTACCGACAATACCTACTCGAGGGAAGAGGTTTTGGGCATGGAGGCTGATATACTGAAGGCATTGAAGTTTGAATTGGGTGGTCCTACAATAAAGACATTTCTAAGAAGATTCATCTCTAAAGTTGGTCAAGAGGGCATTGATGCTTCTGAGTTGCAGTTTGAGTTCCTTAGCTGTTACCTTGCTGAGCTCAGTTTGTTGGATTATCATTGTGTGAAGTTCTTGCCTTCTATGGTGGCTGCATCAGTTGTATTTCTCGCACGTTTTATGTTAAGCCCAAAGACTCATCCTTGGAATTTAGCCATCTATCAACTCACCAGATATAAACCAGCTGAATTGAAGGAATGTGTTCTAACCATACATGACTTGTACCTCGGTAGGAAAGGGGGCTCTTTGCAAGCTGTGAGAGATAAATACAAACAACACAAGTTTAAATGTGTGGCAACAACACCCTCTCCGCCAGAGATACCTCTTTCTTTTTTTGAATTTAGAGAGGCAGATCCTTAG 1098 0.4135 MADQENTIPTRRPQREAKIRAVAALCEQRKRKRVERVERVALGDLTNTSAKHFSDIHKQKKRNTAKSKSVEESPVPEILEVKSEDPQLCGPYVSDIYDYLRNLEVDPSKRPLSDYIMKVQRDVNSSMRGVLVDWLVEVAEEYKLVSDTLYFAVSYIDRFLSLNDLSRQKLQLLGVSSMLIASKYEEIKPPEVEDFCYITDNTYSREEVLGMEADILKALKFELGGPTIKTFLRRFISKVGQEGIDASELQFEFLSCYLAELSLLDYHCVKFLPSMVAASVVFLARFMLSPKTHPWNLAIYQLTRYKPAELKECVLTIHDLYLGRKGGSLQAVRDKYKQHKFKCVATTPSPPEIPLSFFEFREADP 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00379 365 MobiDBLite consensus disorder prediction 53 74 - -
Trre1g00379 365 Pfam Cyclin, N-terminal domain 95 223 IPR006671 -
Trre1g00379 365 SUPERFAMILY Cyclin-like 226 352 IPR036915 -
Trre1g00379 365 CDD CYCLIN_AtCycA-like_rpt2 226 341 - -
Trre1g00379 365 FunFam Cyclin A1 213 346 - -
Trre1g00379 365 ProSitePatterns Cyclins signature. 128 159 IPR006671 -
Trre1g00379 365 PIRSF Cyclin_A_B_D_E 2 355 IPR046965 GO:0016538|GO:0044772
Trre1g00379 365 SMART Cyclin_C_2 226 350 IPR004367 -
Trre1g00379 365 FunFam Mitotic cyclin 6 111 211 - -
Trre1g00379 365 Gene3D - 95 346 - -
Trre1g00379 365 Gene3D - 111 224 - -
Trre1g00379 365 Pfam Cyclin, C-terminal domain 226 349 IPR004367 -
Trre1g00379 365 SMART cyclin_7 133 217 IPR013763 -
Trre1g00379 365 SMART cyclin_7 230 319 IPR013763 -
Trre1g00379 365 SUPERFAMILY Cyclin-like 84 223 IPR036915 -
Trre1g00379 365 CDD CYCLIN_AtCycA_like_rpt1 85 222 - -
Trre1g00379 365 PANTHER CYCLINS 62 344 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00379 Trre-Chr1 2710006 2712284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00379 1 359 Core Cell Cycle Gene Families AT5G43080 59.066 1.97e-148 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00379 K06627 - gmx:100791691 528.865