Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00356 ATGCGTGGATTGCAAAAATTGAAGAGAGTTTCATGGGCCTCAGATATAGATCTTTGTCAGGTTAAGTTATTCTTATCAGAGGATTCTCCTTCACAAGTTGGGTTGAATTCTCAAGATCATCTCCAAGCAAAGACATCGTCCTTGTTGCATCAAGGAGAAGCTAGTTCTGATGATATTTTGCCTCCTGGATTTGAGGGAACTCATGCTTCAAGTCAGTTTGACATTAAGCTGTCCCAAATACCAGTTATTAATTGGATTAATCCACCTAAGATCGTGTTAGATCTCACATGGCAAGTGGTGGCTGGGGAAGAAAGCAAAGAGATAGTTGATCAACATCAGAGGGAGATGAGAGTCCTTGAAGCTATTTATCCACGAATATCTTCCATTCCTCCAAATCCTGCTGTTCCAGTGAACGTCGAAGATTCCAATCACATTGATGGTCATACTGTTGTGATCCCAATTACGCCTGTTGAAGACGGGGATGTGGCAATAGATACATTATCTCCTGGTATATTAGACGGTTCAAACTCTGCTACGAGTATGTCAATGGTATCTGATGTAGCTGCTGCATCTGTTGCTTTAACTAGCTTAGTGAAGAACAGTGAACATGGTAATTTGATTGACCGTGAATTACTCAATAATATTCTCAACAATCCTGAAGTGATTGAGAAGTTAGTTAGAGATTATGGAGCTCAAAATAATGCACAATATGTACAAAACATGGGATCATCTTCAGGAGTTTATTCATATGCTCCTAATCGTGTTAATCAAGTTGAAACCACTACAACCTCATCAAACGCTTTTTCATCCACTTCTTCCTATACTCACGCAACTGGAGGTCAGATGGCGCCAACTATTTCTACCCAATGGCATTCTAGGCCTGTAATGAGTTCGGCTATTGCTGCTACTTCTGTTGAGGCCCCTTCAACAAAAGATGTAAACTACTATAAGAGCTTGATTCAACAACATGGAGGAGATAAACAAGAAACACTTCCACACTCCTCCACTAGTCGTCAGAACCAGCAACCATTATCAAACTATGATACAGTACACAATTTTAGAGCAAAAGGGTCAAAACCAAAGATAATGAAGCCTTGTATATTTTTTAATAGTTCCAGAGGATGTCGGAATGGAGCTAATTGTTCCTTTCAGCACGATGCATCATTTCAGCCACAACAAGGTAATCCTGTGTCAGGGATGCAAAGTTCAAAGAGAATGAAAATGGATAATGAGATTAGCAGTTAA 1245 0.3976 MRGLQKLKRVSWASDIDLCQVKLFLSEDSPSQVGLNSQDHLQAKTSSLLHQGEASSDDILPPGFEGTHASSQFDIKLSQIPVINWINPPKIVLDLTWQVVAGEESKEIVDQHQREMRVLEAIYPRISSIPPNPAVPVNVEDSNHIDGHTVVIPITPVEDGDVAIDTLSPGILDGSNSATSMSMVSDVAAASVALTSLVKNSEHGNLIDRELLNNILNNPEVIEKLVRDYGAQNNAQYVQNMGSSSGVYSYAPNRVNQVETTTTSSNAFSSTSSYTHATGGQMAPTISTQWHSRPVMSSAIAATSVEAPSTKDVNYYKSLIQQHGGDKQETLPHSSTSRQNQQPLSNYDTVHNFRAKGSKPKIMKPCIFFNSSRGCRNGANCSFQHDASFQPQQGNPVSGMQSSKRMKMDNEISS 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00356 414 MobiDBLite consensus disorder prediction 386 414 - -
Trre1g00356 414 MobiDBLite consensus disorder prediction 261 282 - -
Trre1g00356 414 SUPERFAMILY CCCH zinc finger 365 387 IPR036855 GO:0046872
Trre1g00356 414 ProSiteProfiles Zinc finger C3H1-type profile. 360 388 IPR000571 GO:0046872
Trre1g00356 414 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 239 410 - -
Trre1g00356 414 MobiDBLite consensus disorder prediction 322 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00356 Trre-Chr1 2510373 2514715 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre1g00356 zf-CCCH 0.00023 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00356 - - cam:101501814 642.499