Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00341 ATGGACGGTTACGACGGAACCGTTAGACTCGGAGCTATTAACATGAAGTATGATCGCGGCGACTTTGACTCCGGTGCCGATGTATCTGTTTCTTCTCCGGTCACCAAACAAAAAGCCGCTGCCGCTAAACAATTCATCGAGAATCATTACAAGAATTACCTTCAAGGATTGCAGGATCGCAAAGATAGACGTAGAGCACTTCAAAGGAAAGTGCAGGAATCTCAACTACCAGCCGAAGAACAGGAGGTGATGATGAGGAATTTGGAGCGTAAAGAAACCGAGTACATGAGGCTTCAAAGACGTAAAATTGGAATTGATGATTTTGAGCAATTAACAGTAATTGGTAAAGGTGCTTTTGGTGAGGTGAGGTTATGTCGTGCTAAAAGCACAGGAGAAATTTTTGCCATGAAGAAATTGAAGAAGTCAGAAATGCTTAGCCGTGGACAGGTGGAACATGTACGATCTGAGAGGAACTTGCTGGCAGAGGTTGATAGCAGATGCATAGTAAAGCTCCACTATTCATTCCAAGATTCAGATTTCCTATATCTCATCATGGAATATTTACCTGGCGGTGACATTATGACATTGTTAATGAGAGAAGATATTCTTTCGGAAAATGTTGCTCGTTTCTACATTGCCGAAAGCATTCTTGCTATCCACTCAATACATCAGCACAACTATGTACATAGGGATATAAAACCAGATAACCTTATACTGGATAAAAGTGGTCATTTGAAGCTTTCAGACTTTGGCTTATGTAAGACTCTTGATGACAAGTATTCAACAATTTTATTGGAAAATGAAGATTTAATCGGTCAAGAGTCAACTAGTGAAACTGAAGGATATTTTGTATCCCCTTGGTTGATGCCAAAGGAACAACTACAGCAGTGGAAACGTAATCGCCGTGCACTGGCATATTCAACGGTTGGAACTCTTGATTACATGGCTCCTGAAGTTTTGCTCAAGAAGGGGTATGGAATAGAGTGTGATTGGTGGTCTCTTGGGGCAATCATGTATGAGATGCTTGTTGGATATCCTCCATTTTGTTCTGATGATCCAAGAATGACCTGCCGTAAGATTGTGAACTGGAAAACATGCCTGAAATTCCCCGAAGAACCCAAGATATCAGCTGAAGCTAAAGATCTCATCTGTCGCTTACTATGTGATGTTGACACAAGACTAGGAACGAGAGGAGTAGATGAAATAAAGGCTCATCCATGGTTCAAGAGCGTTCAGTGGGACATGCTTTATGAAATGGAAGCTGCATATAAACCTACAGTTATTGGAGACTTGGACACACAAAACTTCGAGAAGTTTCCTGATGTAGGCCCACCATCCGTAACAGAAACCGTGGGACCTTGGAGAAAGATGTTGACATCCAAAGACACTAATTTCATAGGATATACTTTTAAGAAATCAGATATCCTTAAATCGATTGAAAGTACAGATGAAGATATCAGAGTAAATGGATCATCAAAGTCCCCTTCCTTGATTTCCTTGTTAGGGCGAATTGATTTGCAAGATACTGTCATTCCAGAAAGTGTACAGAAGCCAGAAACTTGA 1563 0.4088 MDGYDGTVRLGAINMKYDRGDFDSGADVSVSSPVTKQKAAAAKQFIENHYKNYLQGLQDRKDRRRALQRKVQESQLPAEEQEVMMRNLERKETEYMRLQRRKIGIDDFEQLTVIGKGAFGEVRLCRAKSTGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLHYSFQDSDFLYLIMEYLPGGDIMTLLMREDILSENVARFYIAESILAIHSIHQHNYVHRDIKPDNLILDKSGHLKLSDFGLCKTLDDKYSTILLENEDLIGQESTSETEGYFVSPWLMPKEQLQQWKRNRRALAYSTVGTLDYMAPEVLLKKGYGIECDWWSLGAIMYEMLVGYPPFCSDDPRMTCRKIVNWKTCLKFPEEPKISAEAKDLICRLLCDVDTRLGTRGVDEIKAHPWFKSVQWDMLYEMEAAYKPTVIGDLDTQNFEKFPDVGPPSVTETVGPWRKMLTSKDTNFIGYTFKKSDILKSIESTDEDIRVNGSSKSPSLISLLGRIDLQDTVIPESVQKPET 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00341 520 FunFam Non-specific serine/threonine protein kinase 79 191 - -
Trre1g00341 520 SMART serkin_6 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00341 520 ProSiteProfiles AGC-kinase C-terminal domain profile. 409 480 IPR000961 GO:0004674|GO:0005524|GO:0006468
Trre1g00341 520 CDD MobB_NDR_LATS-like 42 103 - -
Trre1g00341 520 Gene3D Phosphorylase Kinase; domain 1 69 191 - -
Trre1g00341 520 Gene3D Transferase(Phosphotransferase) domain 1 307 426 - -
Trre1g00341 520 Pfam Protein kinase domain 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00341 520 CDD STKc_NDR_like 106 471 - -
Trre1g00341 520 FunFam Non-specific serine/threonine protein kinase 307 426 - -
Trre1g00341 520 FunFam Non-specific serine/threonine protein kinase 192 259 - -
Trre1g00341 520 ProSiteProfiles Protein kinase domain profile. 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00341 520 Gene3D Transferase(Phosphotransferase) domain 1 192 259 - -
Trre1g00341 520 Gene3D Phosphorylase Kinase; domain 1 427 437 - -
Trre1g00341 520 SUPERFAMILY Protein kinase-like (PK-like) 83 457 IPR011009 -
Trre1g00341 520 SMART pkinase_C_6 409 472 IPR000961 GO:0004674|GO:0005524|GO:0006468
Trre1g00341 520 Coils Coil 81 101 - -
Trre1g00341 520 PANTHER SERINE/THREONINE-PROTEIN KINASE 32 448 - -
Trre1g00341 520 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Trre1g00341 520 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
Trre1g00341 520 Pfam Protein kinase C terminal domain 429 470 IPR017892 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00341 Trre-Chr1 2409436 2416698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00341 1 508 AGC Kinase Gene Family AT5G09890 78.711 0.0 835
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Trre1g00341 Pkinase 7.7e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00341 K08790 - gmx:100814085 964.14