Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00339 ATGGTTTCAACTTTCCTTTACATCATTGTCCTCTTTCTTCTTACCTTATTTTCATTTAAGTTCTTTCTAAAACGAAAAAATAGAACAAACCAAACAAGTGCAAAGCTTCCTCCTGGTTCAATGGGATGGCCTTACATAGGACAAACCCTCCAACTCTACTCTCAAGACCCAAATTTTTTCTTCTTCTCCAAACAAAAAAGGTACGGAGAAATATTTAAGACGAACATCCTAGGATGTCCATGTGTGATGTTGGCAAGTCCAGAAGCTGCACGTTTTGTGCTTGTGACACAATCTCACTTATTTAAACCAACATATCCTAAAAGCAAAGAACGTTTGATTGGTCCTAGTGCTTTGTTTTTTCACCAAGGTGAGTACCACTTGCGTTTGAGGAAGCTTATTCAAAAGTCTCTCTCCCTCGATTCACTTCGCAACTTGGTTCCTCATATTGAAGCTTTAGCCATTTCCACTATCAAATCTTGGGGTCATGATGGATGCATCATTAACACTTTTAAGGAAATGAAAAAATTTTCATTTGAAGTTGGTATTCTCAAGATTTTTGGAAATTTAGAGCCAAGGTTGAGGGAAGAGCTAAAGAAGAATTATTGGATTGTTGACAATGGTTACAATTCATTTCCAACTAAAATTCCTGGTACACAATACAAAAAGGCACTATTGGCAAGAAAGAGACTTGGAAGTATTTTGAAGGAAATAATTAGTGAGAGGAAGGAGAAGAATTTGGTTGAAAGTGAAAGAGATCTTTTGAGCTGTTTATTGAATTGGAAAGGTGAAGGTGGAGACATGTTAAGTGATGATGAAATTGGAGATAACATTATTGGAGTTCTTTTTGCTGCTAGGGATACCACAGCTACTGTCATGACTTGGGTGGTCAAGTACTTGCATGATGAACCTAAACTTTTGGAGTGTGTAAAGGCTGAGCAGAGGGCAATTTACAAAGAAAATGATGGTAAACTACAGCTGAGTTGGAATCAGACTAGAAATATGCCAATTACCTATAAGGTTGTGTTAGAGAGCATGAGAATGGCAAGTGTTATATCATTTCCTTTTAGAGAAGCAGTAGCTGATGTAGAGTACAATGGATTCCTAATACCAAAAGGGTGGAAAGCAATGCCAGTGTTCAGAAATATTCATCACAATCCAGAATTTTTTCCAGAGCCTCACAAATTCAACCCTTCAAGGTTTGAGGTTTCACCAAAGCCAAATACTTTCATGCCATTTGGTAGTGGAGTACATGCTTGTCCTGGAAATGAGCTTGCTAAGCTGGAGACACTCATTATGATCCATCATTTGGTCACCAAGTTTAGGTTGGAAGTGATAGGATCACAATGTGGAATTCAATATGGCCCATTTCCACTACCTTTGAATGGACTACCAGCCAGGTGTTGGAGAGAATCTACCAGCAACTAG 1425 0.3825 MVSTFLYIIVLFLLTLFSFKFFLKRKNRTNQTSAKLPPGSMGWPYIGQTLQLYSQDPNFFFFSKQKRYGEIFKTNILGCPCVMLASPEAARFVLVTQSHLFKPTYPKSKERLIGPSALFFHQGEYHLRLRKLIQKSLSLDSLRNLVPHIEALAISTIKSWGHDGCIINTFKEMKKFSFEVGILKIFGNLEPRLREELKKNYWIVDNGYNSFPTKIPGTQYKKALLARKRLGSILKEIISERKEKNLVESERDLLSCLLNWKGEGGDMLSDDEIGDNIIGVLFAARDTTATVMTWVVKYLHDEPKLLECVKAEQRAIYKENDGKLQLSWNQTRNMPITYKVVLESMRMASVISFPFREAVADVEYNGFLIPKGWKAMPVFRNIHHNPEFFPEPHKFNPSRFEVSPKPNTFMPFGSGVHACPGNELAKLETLIMIHHLVTKFRLEVIGSQCGIQYGPFPLPLNGLPARCWRESTSN 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00339 474 PRINTS E-class P450 group I signature 65 84 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00339 474 PRINTS E-class P450 group I signature 419 442 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00339 474 PRINTS E-class P450 group I signature 292 318 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00339 474 PRINTS E-class P450 group I signature 409 419 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00339 474 PRINTS E-class P450 group I signature 378 402 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00339 474 PRINTS E-class P450 group I signature 272 289 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00339 474 PRINTS P450 superfamily signature 339 350 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00339 474 PRINTS P450 superfamily signature 410 419 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00339 474 PRINTS P450 superfamily signature 419 430 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00339 474 PRINTS P450 superfamily signature 283 300 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00339 474 PANTHER CYTOCHROME P450 26 33 444 - -
Trre1g00339 474 Pfam Cytochrome P450 37 445 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00339 474 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 412 421 IPR017972 GO:0005506|GO:0016705
Trre1g00339 474 FunFam Abscisic acid 8 26 469 - -
Trre1g00339 474 CDD CYP90-like 65 466 - -
Trre1g00339 474 Gene3D Cytochrome P450 25 468 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00339 474 SUPERFAMILY Cytochrome P450 31 468 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00339 Trre-Chr1 2372471 2376823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00339 1 471 Cytochrome P450 AT3G19270 63.347 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00339 K09843 - gmx:100779978 787.719