Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00310 ATGTCTACTAAGAATGAACATCATCAAACAGTTCCTCTTTCGGTTCTTTTGAAGCGTGAATTGATGAGTGAGAAAATTGAAAACCCTGATATTGTTCATGGTCAAGCTGGGCAAAGCAAGAAAGGAGAGGATTTCACGCTGTTAAAGTCCGACTGTCAGAGGATGGTTGGTGATGGGGTCTATACATATTCCGTTTATGGGCTATTTGATGGACACAATGGATCTGCTGCTGCTATTTATTCCAAGGAGAATCTTCTAAATAATATTTTAAGTGCAGTTCCTCCAGATCTTAACAGAGATGAATGGTTAGCAGCGTTGCCTAGAGCTATGGTTGCAGGCTTTGTAAAAACTGATAAAGATTTTGCTGAGAAAGGTCAAAAATCAGGAACAACTGTCACCTTTGTGATTATAGAAGGATGGGTTGTAACGGTTGCATCAGTTGGCGATTCCCGTTGCGTACTAGAATCTTCTGAAGGAGGGATTTATTACTTGTCAGCAGATCATAGGCTAGAAACAAATGAAGAGGAAAGGATTCGTATCACTTCTAGTGGGGGTGAGGTTGGTCGTTTAAATACAGGGGGAGGTGCAGAGGTTGGTCCTTTGAGATGTTGGCCTGGTGGCCTGTGTCTTTCACGATCTATCGGAGATATGGATATTGGTGAATTTGTTGTCCCTGTACCTTATGTTAAACAAGTGAAGCTATCCACAGGTGGAGGCCGGCTTGTTATCTGTAGTGATGGTGTCTGGGATGCTTTAGCTGCAGAAGTGGCCCTTGATTGTTGCCGCGGCATGTCAGCAGAGGCTTCTGCACCACAGATTGTAAAGGACGCTATACAAGCAAAGGGACTTAGAGATGATACAACCTGCATTGTTGTTGATATATTACCTCAGGAGAAGCCATCTGCTCCTGCGCCACCACCAAAGAAGCCAGTAAAAGGAATGCTCAAGGCCATGTTTCGTAAAAAGTCTTCGGAATCATCTTCTATTGACAAAGAATACTTGGAGCCAGATGTGGTAGTGGAGCTGTATGAGGAAGGCTCTGCTATGCTTTCAGAGAGGTTAGAAACAAAATATCCACTATGCAACATGTTCAAGCTGTTCATATGTGCAGTATGTCAAGTAGAAATAAAACCCGGAGAGGGCATTTCCGTACATGAGGGTGCAGACAACCCTCGAAAAGTGCGCCCCTGGGATGGACCTTTTCTTTGTTTTAGTTGCCAGGAGAAGAAAGAAGCCATGGAAGGGAAAAGAGCATCAGATAGAAATAGCAGCGGAAGTGATGAATGA 1287 0.4367 MSTKNEHHQTVPLSVLLKRELMSEKIENPDIVHGQAGQSKKGEDFTLLKSDCQRMVGDGVYTYSVYGLFDGHNGSAAAIYSKENLLNNILSAVPPDLNRDEWLAALPRAMVAGFVKTDKDFAEKGQKSGTTVTFVIIEGWVVTVASVGDSRCVLESSEGGIYYLSADHRLETNEEERIRITSSGGEVGRLNTGGGAEVGPLRCWPGGLCLSRSIGDMDIGEFVVPVPYVKQVKLSTGGGRLVICSDGVWDALAAEVALDCCRGMSAEASAPQIVKDAIQAKGLRDDTTCIVVDILPQEKPSAPAPPPKKPVKGMLKAMFRKKSSESSSIDKEYLEPDVVVELYEEGSAMLSERLETKYPLCNMFKLFICAVCQVEIKPGEGISVHEGADNPRKVRPWDGPFLCFSCQEKKEAMEGKRASDRNSSGSDE 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00310 428 SUPERFAMILY PP2C-like 32 294 IPR036457 -
Trre1g00310 428 CDD PP2Cc 37 294 IPR001932 -
Trre1g00310 428 MobiDBLite consensus disorder prediction 409 428 - -
Trre1g00310 428 Pfam Protein phosphatase 2C 58 283 IPR001932 -
Trre1g00310 428 SMART PP2C_4 22 292 IPR001932 -
Trre1g00310 428 Gene3D - 32 301 IPR036457 -
Trre1g00310 428 PANTHER PROTEIN PHOSPHATASE 38 293 IPR015655 GO:0004722|GO:0006470
Trre1g00310 428 FunFam probable protein phosphatase 2C 12 33 300 - -
Trre1g00310 428 ProSiteProfiles PPM-type phosphatase domain profile. 28 294 IPR001932 -
Trre1g00310 428 SMART PP2C_SIG_2 55 294 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00310 Trre-Chr1 2224563 2228810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00310 1 427 PP2C-type Phosphatase Gene Family AT1G47380 77.389 0.0 709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00310 - - gmx:100778367 737.643