Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00288 ATGAGTTCAATTTTGTCACAAAAAGTACTTTTGTGGTCTTTGATTTTGTTAGTGTGCCACTTTTCCATCTCATGCAAAGCAAACCAACAAAGTGAATACCTCTACAAGTTTATTCAATCAAAGAGGTCTCAACAAAATTCTTCTTCACATGGAGAAGCCTATTATTCAAGTGCTTTTGTTGATGAACATGTTTCAAAGGTACATGTTGTTGAACAACAATTAAGGTTGATGAAAGCTGATAAGGTAAAGGCTTTGCCAGGACAACCAAAAGGTGTGAATTTTGATCAATATGCTGGCTATGTATCTGTGGATGCAAAAGCAGGGAGAGAACTTTTCTATTACTTTGTTGAATCGCCTTTAAATTCTTCCATAAAACCTCTTGTTTTATGGCTAAATGGAGGACCTGGATGCTCTTCATTTGGTTATGGAGCCATGCAAGAATTGGGACCTTTTAGAGTCAACAGTGATGGAAGGACCCTTTCCCTTAATAAAGATTCATGGAATAATGTGGCAAATGTTATCTTCCTAGAGTCACCAGTAGGAGTTGGATTTTCTTATTCAAACAAACCTTCAGATTACTCTAACATTGGCGACAATAGCACAGCCAGAGATTCTTACATTTTTCTTCTAAACTGGCTCGAGAGATTTCCACAATACAAGACTCGAGATTTCTTCATAGCCGGTGAAAGTTATGCTGGCCATTATGTTCCTCAGCTAGCTCACCTCATTCTCTCAAATAATAAGAAAATGAAACATCACACAGTTATCAATTTGAAAGGAATCGCGGTTGGGAATGGTTGGATTGATGACAATTACTGTACAAAGGGAATGTATGACTATTTCTGGATGCAGTCTCTAAACTCTGATGAAACTCATCAAGGAATTGAAAAACTTTGTGACTTTAGGAACTTCAACTTAACAAATGAATGCATTGGATATCAAAATAAAGCCGATGATGAGCTTGGAAATATTAACGTTTACAACATATATGCCCCACTTTGTAATTCATCTACAACAAAAATTAGTTACTCTGGCAGTGATTTTGACCCTTGTTCTGAAGATTATACAGTTGCCTACTTAAATCTACCTGAAGTTCAAAAGGCTCTTCATGCTAAAGCCAGAAAATGGTCTTCTTGCAGTGACCTGAGTTGGACAGATAGCCCAGCAAGTATTCTACCAACTATAAATAGATTAATATCAAGTGGTATAAGCATTTGGATATATAGTGGTGATATAGATGGGCGTGTTCCCATAACCTCAACAAAGTATTCAATAAATTCCTTAAAACTACCTGTAAATACAGCATGGCGTCCATGGTACACCGGCAAAGAGGTTGGAGGATATGTGATTGGTTACAAAGGGCTCACACTTGTCACTGTAAGAGGAGCTGGGCATATGGTTCCAAGTTACCAACCACACAGAGCACTATCCATGATCTCATCTTTCCTTCATGGACAACTTCCCCCTGAATCAAACTATTAA 1482 0.3765 MSSILSQKVLLWSLILLVCHFSISCKANQQSEYLYKFIQSKRSQQNSSSHGEAYYSSAFVDEHVSKVHVVEQQLRLMKADKVKALPGQPKGVNFDQYAGYVSVDAKAGRELFYYFVESPLNSSIKPLVLWLNGGPGCSSFGYGAMQELGPFRVNSDGRTLSLNKDSWNNVANVIFLESPVGVGFSYSNKPSDYSNIGDNSTARDSYIFLLNWLERFPQYKTRDFFIAGESYAGHYVPQLAHLILSNNKKMKHHTVINLKGIAVGNGWIDDNYCTKGMYDYFWMQSLNSDETHQGIEKLCDFRNFNLTNECIGYQNKADDELGNINVYNIYAPLCNSSTTKISYSGSDFDPCSEDYTVAYLNLPEVQKALHAKARKWSSCSDLSWTDSPASILPTINRLISSGISIWIYSGDIDGRVPITSTKYSINSLKLPVNTAWRPWYTGKEVGGYVIGYKGLTLVTVRGAGHMVPSYQPHRALSMISSFLHGQLPPESNY 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00288 493 Gene3D - 391 485 - -
Trre1g00288 493 FunFam Carboxypeptidase 347 487 - -
Trre1g00288 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 212 237 IPR001563 GO:0004185|GO:0006508
Trre1g00288 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 455 468 IPR001563 GO:0004185|GO:0006508
Trre1g00288 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 163 175 IPR001563 GO:0004185|GO:0006508
Trre1g00288 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 176 186 IPR001563 GO:0004185|GO:0006508
Trre1g00288 493 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 80 472 IPR001563 GO:0004185|GO:0006508
Trre1g00288 493 Gene3D - 351 382 - -
Trre1g00288 493 SUPERFAMILY alpha/beta-Hydrolases 82 486 IPR029058 -
Trre1g00288 493 FunFam Carboxypeptidase 391 485 - -
Trre1g00288 493 ProSitePatterns Serine carboxypeptidases, histidine active site. 455 472 IPR033124 GO:0004185
Trre1g00288 493 ProSitePatterns Serine carboxypeptidases, serine active site. 226 233 IPR018202 GO:0004185
Trre1g00288 493 FunFam Carboxypeptidase 76 336 - -
Trre1g00288 493 Gene3D alpha/beta hydrolase 74 345 IPR029058 -
Trre1g00288 493 Pfam Serine carboxypeptidase 86 485 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00288 Trre-Chr1 2103318 2108329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00288 359 486 Calmodulin-binding Proteins AT2G22960 31.579 8.19e-13 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00288 K16297 - mtr:11416378 823.542