Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00278 ATGGCCTGTGAGTGTAAGGGAAAGCTAAATGTGAGAAAACCTCAGTTCTATCAGGTCTTTTCCCCTTCTTCTACCTCTCAATCTCTGAGAATTCCAGATGGTTTTGTCCGTCAAATGGAGGGCACCACACGCGGATTAGTTTCATTAACTGGTCCTAGTGGAAATACTTGGCAAGTTCGATTAGTTGAGCACGACAATTATCTATTTTTGCATCATGGATGGTCAACATTTGTGGGAGATCATCATTTAGAATATGGCGACCTTTTGGTTTTCCGATACGAGGGTCACCTGCATTTCACTGTGCAAGTGTTTGGTGAGAATGCATGTGAAAAAGAAGCAGCATTTCATACTGAATGCAATCTAAATTCATCCAACTTCGATAATATTGAAGGACAGAAAAGTGACGCTAAGGAGAACCAGAAGCTAGAGCTGGGTATTGCCGGTAGAGATCTATCCAAATATGAGGTAGTTAAACCAATTAGTATGATCAGAGAAACAGAAGAAACCTACAATGAATGTTCAGCTAGTGCCGTCCCTGTTCCTTTTCACGCAGGAAATAGTAATGAAGATCAAGCTTCGCTGTCAACACTATCAGCACATGATGAGAAAAAGATAGCCCAGTCATTTACCTCCTCTTTTCCATATTTTGTTAAAATAATTAAAACCTTCAATGTCAGTGGTTCATATACTCTGAATATACCGTATCAATTTTCGACAGCACATCTTCCAAACTGCAAGATACAGATTATTCTTCATAATTTGAAGGGAGAACACTGGACTGTTAATTCTGTTCCAACAACCAGAGTGCATACAAGTCACACTCTATGTGGAGGATGGATGGCTTTTGTCCGTGGCAATAGCATAAAGGTTGGAGATGTCTGCATTTTTGAACTTATACATCAGTATGAATTACGTGTTCGCATTGCTGAGGTTGGAAAAGATGGACTAGACTCTCAGGTTGGAAAACTAGCTTTTAGTATGCTTACTGCAAGACATGATGTCTCTTGCCACAAGACTTCCGGGTATATGCCAAAGAATCCTAAAGTCAGCTCAAAGTGCAGAAACAAAGTTGATCGGTCAGATAAGAAGTTGTCAAAAATTGGTCAAGAAGACGCTGTTTTATCCATTGACTTAAAGAAATCTAGTAGAGCTTCAAATACTTCAAAGAAGATGGGGCTTAGCCCCAAGTCGAAAGCTGTCCATAAAAAGCTGGCTGTACCGAGGAAACATCGTGTTGAAGATGAACTAAGCTCCCAGGCTAAAGCTGGTTTGAGAATGTTGTTTGCACTCGACGAGCAAAGAGTAGCTGAAGCTTTTAGTTCCCCATTTCCTAATTTTGTGAAAATCATGAAGAAGTTCAATGTCAGCGGATCATACACTTTGAAAATCCCATATCAGTTCTCCGCTGCACATCTCCCCGCCTACAAAACAGAAGTTACACTTCGCAATTCAAGAGGCGATTGTTGGACTGTGAACTCCGTCCCAGATGCTAAAGGGAGAACAATTCACACCTTTTGTGGGGGATGGATGGCCTTTGTTCGTGATAATGACATCAATTTTGGTGACACATGCATTTTTGAGCTGGTTTCTCATTATGTGATGCAGGTTTATATATCTGGGGTTGGAAAGGAAGGTCTTGACAACCAAAATGGGCATGTGAAACTTTTAGCTAACTAG 1677 0.4073 MACECKGKLNVRKPQFYQVFSPSSTSQSLRIPDGFVRQMEGTTRGLVSLTGPSGNTWQVRLVEHDNYLFLHHGWSTFVGDHHLEYGDLLVFRYEGHLHFTVQVFGENACEKEAAFHTECNLNSSNFDNIEGQKSDAKENQKLELGIAGRDLSKYEVVKPISMIRETEETYNECSASAVPVPFHAGNSNEDQASLSTLSAHDEKKIAQSFTSSFPYFVKIIKTFNVSGSYTLNIPYQFSTAHLPNCKIQIILHNLKGEHWTVNSVPTTRVHTSHTLCGGWMAFVRGNSIKVGDVCIFELIHQYELRVRIAEVGKDGLDSQVGKLAFSMLTARHDVSCHKTSGYMPKNPKVSSKCRNKVDRSDKKLSKIGQEDAVLSIDLKKSSRASNTSKKMGLSPKSKAVHKKLAVPRKHRVEDELSSQAKAGLRMLFALDEQRVAEAFSSPFPNFVKIMKKFNVSGSYTLKIPYQFSAAHLPAYKTEVTLRNSRGDCWTVNSVPDAKGRTIHTFCGGWMAFVRDNDINFGDTCIFELVSHYVMQVYISGVGKEGLDNQNGHVKLLAN 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00278 558 CDD B3_DNA 214 308 IPR003340 GO:0003677
Trre1g00278 558 Gene3D - 8 109 IPR015300 -
Trre1g00278 558 CDD B3_DNA 14 104 IPR003340 GO:0003677
Trre1g00278 558 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 23 314 IPR044837 -
Trre1g00278 558 ProSiteProfiles B3 DNA-binding domain profile. 446 542 IPR003340 GO:0003677
Trre1g00278 558 SMART B3_2 16 107 IPR003340 GO:0003677
Trre1g00278 558 SMART B3_2 216 312 IPR003340 GO:0003677
Trre1g00278 558 SMART B3_2 446 542 IPR003340 GO:0003677
Trre1g00278 558 Pfam B3 DNA binding domain 216 307 IPR003340 GO:0003677
Trre1g00278 558 Pfam B3 DNA binding domain 446 531 IPR003340 GO:0003677
Trre1g00278 558 Pfam B3 DNA binding domain 19 104 IPR003340 GO:0003677
Trre1g00278 558 CDD B3_DNA 444 537 IPR003340 GO:0003677
Trre1g00278 558 SUPERFAMILY DNA-binding pseudobarrel domain 439 540 IPR015300 -
Trre1g00278 558 Gene3D - 431 541 IPR015300 -
Trre1g00278 558 Gene3D - 198 311 IPR015300 -
Trre1g00278 558 SUPERFAMILY DNA-binding pseudobarrel domain 10 109 IPR015300 -
Trre1g00278 558 MobiDBLite consensus disorder prediction 381 412 - -
Trre1g00278 558 ProSiteProfiles B3 DNA-binding domain profile. 216 312 IPR003340 GO:0003677
Trre1g00278 558 MobiDBLite consensus disorder prediction 339 361 - -
Trre1g00278 558 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Trre1g00278 558 SUPERFAMILY DNA-binding pseudobarrel domain 209 309 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00278 Trre-Chr1 2007269 2011154 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00278 13 322 B3 DNA Binding Superfamily AT3G18990 23.362 2.48e-19 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g00278 B3 8.3e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00278 - - gmx:100814386 859.366