Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00275 ATGGGAGGAGAAAGCAAATCATGGGAGGAAGACATTTATTGGACCCATTTCCAGTTCATCCATTTCACTCAATTTCTCCGCAATGATTTTCATCAACAACTTGCACTTCCCAAAACATTTTCAAACAATGTAAAGAAGAAATTGCCAGAAAATGTGACCCTTAAAGGTCCTAGTGGAGTTGTGTCGGATGTAGGGCTGACAATTAGAGACGATACCTTGTACTTCACGAATGGTTGGCAACAATTCGTGAAAGACCACTCTTTGAAAGAGAATGATTTCCTTGTCTTTAAGTACAATGGTGAATCGCACTTTGAGGTTTTAATCTTCGGTGGAGAAAGTTTATGTGAGAAAGCAGCTTCTTATTTTGTAAGAAAATGTGGACATGCTCAAACTGAACAAGGGGGTAGCAAGGCAAAGGACACAAACACTGCTACTGAAGAAGTCAATAATACTGCTTCTAATGGTGGTGTTGAATGTAGTTCACCTGAGAATTTTCAGCGTCTTAATAGTATAGGAACACCATTTGATGTAGCTTTTGTAACTACCATTGGGACGACTTTTAATACTGGTGTTGAATCTGCATCCCGAGAGCAGTTCATGGCCGATGCAGTCACTGAGACCACACCTGTAGTGATTCCCTCCCAAACAACCGGCAAAAGGACCAAGAAGCCTGTTAATGAAGTTATGCCTGACCAGACTAAGAAGCGAGGAACATCACCAAAACCAGCTAATTCTAGTGAGAGAGCACTTGAGAAGGAACACTCAGAGGCAGCCATCCCGTGTAGAAGTGGGAAGGAAGATGACCGTTATACTCTCCGCGGAGCTAAACTGTCAAAGTTCTCAGAACCTAACGAGAAAGAGATAGCCCAATCATATACCTCCTCTTTTCCATATTTTGTTAAAATAATGAAATCGTTCAATGTTGGTGGTTCATGTTTGCTGAATATACCAACTCAATTTTCGAAAGCACATTTTCCAAACCACATAATAAAGATTATTCTACATAATTTGAAAGGAGAACAGTGGACTGTTAATTGTGTTAATAAATCGATTGTGCATCATACACATCATATTTTCTGTGGAGGATGGATAGATTTTGTTCGTTGCAATGGCATAAAGGTTGGAGATGTCTGCATTTTCGAACTTATACGTGAGTATGAATTTCGTGTTCGTATCGCTGAGTTTGGAAAAAATGGACTAGACTTCCAGGATGAAAAACTAGATTCTAGTGCCTAG 1236 0.3989 MGGESKSWEEDIYWTHFQFIHFTQFLRNDFHQQLALPKTFSNNVKKKLPENVTLKGPSGVVSDVGLTIRDDTLYFTNGWQQFVKDHSLKENDFLVFKYNGESHFEVLIFGGESLCEKAASYFVRKCGHAQTEQGGSKAKDTNTATEEVNNTASNGGVECSSPENFQRLNSIGTPFDVAFVTTIGTTFNTGVESASREQFMADAVTETTPVVIPSQTTGKRTKKPVNEVMPDQTKKRGTSPKPANSSERALEKEHSEAAIPCRSGKEDDRYTLRGAKLSKFSEPNEKEIAQSYTSSFPYFVKIMKSFNVGGSCLLNIPTQFSKAHFPNHIIKIILHNLKGEQWTVNCVNKSIVHHTHHIFCGGWIDFVRCNGIKVGDVCIFELIREYEFRVRIAEFGKNGLDFQDEKLDSSA 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00275 411 CDD B3_DNA 297 392 IPR003340 GO:0003677
Trre1g00275 411 SUPERFAMILY DNA-binding pseudobarrel domain 18 110 IPR015300 -
Trre1g00275 411 Gene3D - 280 395 IPR015300 -
Trre1g00275 411 MobiDBLite consensus disorder prediction 134 161 - -
Trre1g00275 411 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 27 394 IPR044837 -
Trre1g00275 411 MobiDBLite consensus disorder prediction 214 263 - -
Trre1g00275 411 ProSiteProfiles B3 DNA-binding domain profile. 19 112 IPR003340 GO:0003677
Trre1g00275 411 MobiDBLite consensus disorder prediction 246 263 - -
Trre1g00275 411 CDD B3_DNA 21 109 IPR003340 GO:0003677
Trre1g00275 411 SMART B3_2 22 112 IPR003340 GO:0003677
Trre1g00275 411 SMART B3_2 299 396 IPR003340 GO:0003677
Trre1g00275 411 Pfam B3 DNA binding domain 299 392 IPR003340 GO:0003677
Trre1g00275 411 Pfam B3 DNA binding domain 30 109 IPR003340 GO:0003677
Trre1g00275 411 SUPERFAMILY DNA-binding pseudobarrel domain 294 395 IPR015300 -
Trre1g00275 411 ProSiteProfiles B3 DNA-binding domain profile. 299 396 IPR003340 GO:0003677
Trre1g00275 411 Gene3D - 15 115 IPR015300 -
Trre1g00275 411 MobiDBLite consensus disorder prediction 132 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00275 Trre-Chr1 1991601 1995495 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00275 8 381 REM Transcription Factor Family AT4G33280 32.992 1.96e-51 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g00275 B3 1.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00275 - - tpra:123894208 686.411