Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00273 ATGGACAAAGTTTACAGGGCTATTGGCTGTTCTTGGAGGGTCGTCATGCTTGCACGGCCAGATTACAGCAATGCCAAGACTGACGAAATCATGGCTAATATGCACATCTTTCGGATACATAATGGGATTATCGATCACGATGATGCTGGGCATGATAGAGAGCTTAATGTGTTTCGAATGGAAGCAAGAAGACAAACCAGTGGCGGTGGCAAATCTTGGGAGGAAGACATCTACTGGACCCATTTCCAGTTCATCCATTTCACACAATTTCTCACCACTGATTTTCAACAACATCTTGCACTTCCTAAAACATTTTCAGACAATTTAAAAAAGTTGCCACAAAATGTGACCCTTAAAGGTCCTAGTGGAGTTGTGTGGAATGTAGGGCTGACAACTAGAGATGATACCTTGTACTTTACGAACGGTTGGCAAGAGTTCATGAAAGATCACTCTTTGAAAGAGAATGATTTCCTTGTCTTTAAGTACAATGGTGAATCGCACTTTGAGGTTTTAATCTTTGACGGAGAAAGTTTCTGCGAGAAAGCAGCTTCTTATTTTGTTGGAAAATGTGGACATGCTCAAACTGAACAAGGGGATAGCAAGGAAAAGGAAACAAACAATTATGATGAAGAAATCAGTAATGCTTCTAATGGTGGTGTTGAATGTGGTTCACCTGAGAAATTTCAGCGTCTTAATAGTGGGAATGTTCATACCGAACAAGGGAGTTGCAAGGGAAAGGATACAAACAATTGTGTTGAAGAAGTCAATACTGCTTCTAATGGTGGTGTTGAATGTTGTACACCTCTGAAATTTCGGTCTCTTAACGTTAATAAGACCACACCTGTAGTGTTTGACTTCCATCCAACCGGAAAAAGGACCAAGAGGCCTTTTAATGAAGTTATGTCTATCCCGAGTAAGAGGAGAAAAAGATCACCAAAAGCAGCTAATTCTTGGCAAAGAGGACTTGATCGGCTGGCTTGTAACAAGGAACACTCAGAAGCAGCCATCCTGTATAAAAGTGGGAAGGGAAATGACCATCATATTCTCAGTGGAGCTTCACCTTCAACGCTATCAGCACGTGATGAGAAAAAGATAGCCCAATCAATTACCTCCTCTTTTCCATATTTTGTCAAAATAATCCAAACATTCAATGTCAATGGGTCACGAATTCTGAATATACCTCGTCATTTTTCAATGAGACATCTTCCAAACTGCAACGTAAAGATTATTCTTCATAATTTGAAGGGAGAACATTGGACCGTTAATTCTGTTGCTAGAAGTAGAGTACATACATATCACATTATATGTGGAGGATGGGTGGATTTTGTTCGTGGCAATGGCATAAAGGTTGGAGATGTCTGCATTTTTGAACTTATACGTAAGTGTGAATTACGTGTTCATATCGTCGAGGTTGGAAAAGATGGGCTAGACTCCCAGATTGAAAAAGTAGCTTCTAGTATGCTTACTGCAAGACATGATGTCCCTTGCCGTAAGACTTCCAAATATATGCCAAAGAATCCTAAAGTCAGCTCAACGTGCAGAAACAAAGTTGATCTATCAAATAAAAAGTCGTCAAAGATTGGTCAAGGAGCTGCTTTATCCATATTAAAGAAATACAGTAGAGCTTCAAATACTTCAAAGAAGATGGGGATTTGCCCCAAGTCGAAAGCTGTCCATAAAAAGTTGGCTGTACCGAGGAAACATCGTGTTGAAAAAGTAGCTGAAGCTGGTGTGAGAAAGTTGGGTGCACTCAACGAGCGAAGAGTAGCTGAAGCTTTTGGTTCCTCATTTCCTAATTTTGTGAAAATCATGAAGAACTTCAATGTCAGTGGATCATACACTTTGAAAATCCCGAATCGGTTTTCTGTTGCACATCTCCCCGCCTGCAAAACAGAAGTTACGCTTCGCAATTCAAGTGGCAAATGTTGGACTGTGAACTCTGTCCCAGATGCTAAATTGAGAAAAAATCACACCTTTTGTGGGGGTTGGAACGCCTTTGTTCGTGATAATGACATAAATATCGGTGACACGTGCATATTTGAGCTCGTTTCTCATAATGTGATGCAGGTTTATATATCTGGTGTTGGGAAGGAAGGTTTTGACAATCAAAATGGGAATGTGAAACTTAATTGCTAG 2136 0.4022 MDKVYRAIGCSWRVVMLARPDYSNAKTDEIMANMHIFRIHNGIIDHDDAGHDRELNVFRMEARRQTSGGGKSWEEDIYWTHFQFIHFTQFLTTDFQQHLALPKTFSDNLKKLPQNVTLKGPSGVVWNVGLTTRDDTLYFTNGWQEFMKDHSLKENDFLVFKYNGESHFEVLIFDGESFCEKAASYFVGKCGHAQTEQGDSKEKETNNYDEEISNASNGGVECGSPEKFQRLNSGNVHTEQGSCKGKDTNNCVEEVNTASNGGVECCTPLKFRSLNVNKTTPVVFDFHPTGKRTKRPFNEVMSIPSKRRKRSPKAANSWQRGLDRLACNKEHSEAAILYKSGKGNDHHILSGASPSTLSARDEKKIAQSITSSFPYFVKIIQTFNVNGSRILNIPRHFSMRHLPNCNVKIILHNLKGEHWTVNSVARSRVHTYHIICGGWVDFVRGNGIKVGDVCIFELIRKCELRVHIVEVGKDGLDSQIEKVASSMLTARHDVPCRKTSKYMPKNPKVSSTCRNKVDLSNKKSSKIGQGAALSILKKYSRASNTSKKMGICPKSKAVHKKLAVPRKHRVEKVAEAGVRKLGALNERRVAEAFGSSFPNFVKIMKNFNVSGSYTLKIPNRFSVAHLPACKTEVTLRNSSGKCWTVNSVPDAKLRKNHTFCGGWNAFVRDNDINIGDTCIFELVSHNVMQVYISGVGKEGFDNQNGNVKLNC 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00273 711 SMART B3_2 376 472 IPR003340 GO:0003677
Trre1g00273 711 SMART B3_2 600 696 IPR003340 GO:0003677
Trre1g00273 711 SMART B3_2 87 176 IPR003340 GO:0003677
Trre1g00273 711 SUPERFAMILY DNA-binding pseudobarrel domain 369 470 IPR015300 -
Trre1g00273 711 Pfam B3 DNA binding domain 600 685 IPR003340 GO:0003677
Trre1g00273 711 Pfam B3 DNA binding domain 95 174 IPR003340 GO:0003677
Trre1g00273 711 Pfam B3 DNA binding domain 376 469 IPR003340 GO:0003677
Trre1g00273 711 CDD B3_DNA 598 692 IPR003340 GO:0003677
Trre1g00273 711 Gene3D - 80 179 IPR015300 -
Trre1g00273 711 ProSiteProfiles B3 DNA-binding domain profile. 84 176 IPR003340 GO:0003677
Trre1g00273 711 CDD B3_DNA 86 174 IPR003340 GO:0003677
Trre1g00273 711 ProSiteProfiles B3 DNA-binding domain profile. 600 696 IPR003340 GO:0003677
Trre1g00273 711 Gene3D - 584 695 IPR015300 -
Trre1g00273 711 Gene3D - 358 472 IPR015300 -
Trre1g00273 711 ProSiteProfiles B3 DNA-binding domain profile. 376 472 IPR003340 GO:0003677
Trre1g00273 711 SUPERFAMILY DNA-binding pseudobarrel domain 593 694 IPR015300 -
Trre1g00273 711 CDD B3_DNA 374 468 IPR003340 GO:0003677
Trre1g00273 711 SUPERFAMILY DNA-binding pseudobarrel domain 82 174 IPR015300 -
Trre1g00273 711 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 90 475 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00273 Trre-Chr1 1978639 1984368 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00273 73 198 REM Transcription Factor Family AT4G33280 58.594 2.10e-44 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g00273 B3 2.1e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00273 - - tpra:123885939 985.711