Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00272 ATGGTTAGAAACTTATTAGTTTTGCTTTCAACAATATTTGTAGTGGTTAATGCATTCAACAACCACAATGAGAATCATGGTGGTTACCCAACATGGTTTTCTAAATCTAATCGTATGTTATTGTCTAAGTTTAAGGATGTTGTTCAACCCAATGTAACGGTGGCTAAGGATGGTAGTGGCCAATTTAAGACCGTCACTGAAGCTATTAACTCATACCCGACTAAAAGTCGAGGTAGATACGTTTTCGTCATCTATGTTAAAGCCGGTATCTACAATGAGTATATTACCATTGCTAAAAACAAGAATAACATTCTCTTATATGGTGATGGCCCTACAAAGACCATTATCACCGGAAGCAAGAGTCTTAATAATGGAGCTAGCAAAACAATGGACACTGCTACTTTCTCCACCCTAGGCAAAGATTTTATTGCTAAGTCAATTACATTTGAAAACACGGCGGGTCATGAAGCTGGCCCGGCGGTGGCACTTCACGTGAAAGGTGATCGTTCAGCATTCTTTGATTGCGGAATCCACGGTTATCAAAACACATTGTACGTACACACACTTCGTCAATTCTACCGCAATTGCGAGATCTCTGGAACCATTGATTTCATCTTTGGGCATTCAACTACCTTGATCCAAAATTCTAAAATCATTGTGAGGATGCCAGGTCCAGATCACGGCAACGTTGTGGTGGCAGATGGAACAAAAGAAATGAATGCAGTCACCGGAATAGTCCTTCAAAATTGCTCAATCATGCCAGATAATGAGCTCTACCCTAATAGGTTGACAGTGAAGACTTACTTGGCAAGACCATGGAAGGCATATTCAAGGGCAGTATTTATCAACAATTATTTGGGTGATTTGATTCAACCAGATGGATTTTCAATATGGGGTCCTAATGAAACACACACTGCAACCTGCTACTTTGCAGAATTTGGTAGCACTGGACCAGGTGCCAATTCTCAAGCAAGGGTTAAATGGAGTAAAGGTCTTATTAGTAAGGATGAAGCTACTAAATTCACTGCTCAACCATGGCTTCAAGCTAACACTTGGTTGCCTGCCACTGCCATTCCTTTCAGTCCTGGCCTTGAAGCTTAA 1101 0.4087 MVRNLLVLLSTIFVVVNAFNNHNENHGGYPTWFSKSNRMLLSKFKDVVQPNVTVAKDGSGQFKTVTEAINSYPTKSRGRYVFVIYVKAGIYNEYITIAKNKNNILLYGDGPTKTIITGSKSLNNGASKTMDTATFSTLGKDFIAKSITFENTAGHEAGPAVALHVKGDRSAFFDCGIHGYQNTLYVHTLRQFYRNCEISGTIDFIFGHSTTLIQNSKIIVRMPGPDHGNVVVADGTKEMNAVTGIVLQNCSIMPDNELYPNRLTVKTYLARPWKAYSRAVFINNYLGDLIQPDGFSIWGPNETHTATCYFAEFGSTGPGANSQARVKWSKGLISKDEATKFTAQPWLQANTWLPATAIPFSPGLEA 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00272 366 ProSitePatterns Pectinesterase signature 1. 78 97 IPR018040 -
Trre1g00272 366 Gene3D - 45 364 IPR012334 -
Trre1g00272 366 SUPERFAMILY Pectin lyase-like 48 363 IPR011050 -
Trre1g00272 366 PANTHER PECTINESTERASE 13 354 - -
Trre1g00272 366 Pfam Pectinesterase 51 349 IPR000070 GO:0030599|GO:0042545
Trre1g00272 366 FunFam Pectinesterase 4 48 364 - -
Trre1g00272 366 ProSitePatterns Pectinesterase signature 2. 198 207 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00272 Trre-Chr1 1976317 1977988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00272 25 364 Carbohydrate Esterase AT2G47030 44.476 3.27e-98 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00272 K01051 - gmx:100775225 459.144