Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00269 ATGGGAGTTGTTGGAATTGGAGGCAAATCATGGGAGGAAGACATTTACTGGACCCATTTCCAGTTCATCCATTTCACTCAATTTCTCCGCAATGATTTTCATCAACAACTTGCACTTCCAAAAACATTTTCAAACAATGTAAAGAAGTTGCCAGAAAATGTAACCCTTAGAGGTCCTAGTGGAGTTGTGTGGAATGTAGGGCTGATAACTAGAGACGATACCATGTACTTCACAAACGGTTGGCAACAATTCGTGAAAGTTCACTCTTTGAAAGAGAATGATTTCCTTGTCTTTAAGTATAATGGTGAATCTCACTTTGAGGTTTTAATCTTTGATGGAGAAAGTAATTGTGAGAAGGCGGCTTCTTATTTTGTTGGAAAATGTAGTAATGTTAAAGCTGAGCAAGGGGGTAGCAAGACAAAGGTCACAAACACTTGTGTTGAAGAAGTCATTAATACTGCTTCGAATGGTGGTGTAGAAACACCATTAGTTGTACCTTTTGGAACTACCGATAGAAAGACTTATAATGCTGGTGTCAAACCTGCTTCCCCTGAGAAATTAATGGCTGATTCACTCACTAAGACCACAACTATACAGTATCCATTCCAACCAATTGGCAAAAGGACTGAGAAGCCTGTTAATGAAGTTACGCCTGTCCACCAGACTAAGAAGCGAGGAAGACCACCAAAAGCAGCAACTATCCTGAATAGAAGTGGGAATGAAGATGAGGAGAAAAAGATAGCCCAATCATTTACCTCCTCTTTTCCATATTTAGTTAGAATAATCAAAACGTGCAATGTCATTGGTTCACGTACTCTGAGAATCCCATGTCATTTCGCTGCTGAACATTTCCCTGCCAACCCAACAGAAGTTACGCTTCGCAATTCAAGAGGCGAATGTTGGACTGTGAACTCCGTCCCAGATGGAAGATCAGCTCATATCTTCTGTGGGGGATGGATGGCCTTTGTTCGTGATAATGACTTAAAAGTTGGCGACGTGTGCATTTTTGAGCTCGTTTCTCATTATGTGATGCACGTTTATATATCTGGGGTTGGAAAGGAAGGTTTTGATTATCAAAATGGGCATGCTAAACTTAATAGCGTATAG 1107 0.4047 MGVVGIGGKSWEEDIYWTHFQFIHFTQFLRNDFHQQLALPKTFSNNVKKLPENVTLRGPSGVVWNVGLITRDDTMYFTNGWQQFVKVHSLKENDFLVFKYNGESHFEVLIFDGESNCEKAASYFVGKCSNVKAEQGGSKTKVTNTCVEEVINTASNGGVETPLVVPFGTTDRKTYNAGVKPASPEKLMADSLTKTTTIQYPFQPIGKRTEKPVNEVTPVHQTKKRGRPPKAATILNRSGNEDEEKKIAQSFTSSFPYLVRIIKTCNVIGSRTLRIPCHFAAEHFPANPTEVTLRNSRGECWTVNSVPDGRSAHIFCGGWMAFVRDNDLKVGDVCIFELVSHYVMHVYISGVGKEGFDYQNGHAKLNSV 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00269 368 ProSiteProfiles B3 DNA-binding domain profile. 258 352 IPR003340 GO:0003677
Trre1g00269 368 Pfam B3 DNA binding domain 263 341 IPR003340 GO:0003677
Trre1g00269 368 Pfam B3 DNA binding domain 32 112 IPR003340 GO:0003677
Trre1g00269 368 SUPERFAMILY DNA-binding pseudobarrel domain 21 112 IPR015300 -
Trre1g00269 368 CDD B3_DNA 256 347 IPR003340 GO:0003677
Trre1g00269 368 Pfam AT hook motif 222 233 IPR017956 GO:0003677
Trre1g00269 368 SMART B3_2 258 352 IPR003340 GO:0003677
Trre1g00269 368 SMART B3_2 25 114 IPR003340 GO:0003677
Trre1g00269 368 SUPERFAMILY DNA-binding pseudobarrel domain 251 350 IPR015300 -
Trre1g00269 368 Gene3D - 18 117 IPR015300 -
Trre1g00269 368 ProSiteProfiles B3 DNA-binding domain profile. 22 114 IPR003340 GO:0003677
Trre1g00269 368 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 30 354 IPR044837 -
Trre1g00269 368 Gene3D - 238 351 IPR015300 -
Trre1g00269 368 CDD B3_DNA 24 112 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00269 Trre-Chr1 1962297 1965411 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00269 11 337 REM Transcription Factor Family AT4G33280 32.603 3.28e-48 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g00269 B3 1.6e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00269 - - tpra:123885982 617.846