Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00268 ATGGGAGGAAAAGGAGGACAAACCAGTGGTAGCAGCAAATCATGGGAGGAAGAAATCTACTGGACCCATTTTCAGTTCATCCATTTCATTCAATTTCTTCGCAATGATTTTCAACAACAACTTGAACTTCCTAAAACATTTTCAAACAATGTAAAGAAGAAGTTGCCAGAAAATGTGACCCTTAAAGGTCCTAGTGGAGTTGTGTGGAATATAGGGATAACAACTAGAGATGATACTGTTTACTTTGTGGATGGTTGGCAACGATTCGTGAAAGATCACTCTTTGAAAGAGAATGATTTCCTTCTCTTTAAGTACAATGGTGAATCACTTTTTGAGGTTTTAATCTTTGATGGAGAAAGTAATTGTGAGAAGGCAGTTTCTTATTTTGTTGGAAAATGTGATAATGTTAAAGCTGGACAAAGGGGTCGCAAGGCAAAGGATACAAACACTTCTGCTGAAGAAGTCATTACTGCTTCTGATGGTGGTTCGTCTGAGAAATTTCGGCGTCGTAACAATATTGGAACACCATTAGCTGTACCTTTTGAAACTACGAATGAAAAGACTTCAAATGCTGGTGTTGAATCTGATTCTCCTGAGCAGTTCATGGCTGATGCAGTCACTAAGACCGCACCTGCAGCGCTTCCCTCGCAACGAACCAGCAAAAGGGCGGCTAAGAAGCCTGCTGATGATGTTGTGCCTCCCCCAGCTAGGAAGCGAGGAAGACCACCAAGAGCAGCTAGTTCTAGTGGGACGGGACTTGATTTGGTGCCATTTAATTCGGAGGCTTTTAACAAGGAACTCTCAGGTTAA 810 0.4185 MGGKGGQTSGSSKSWEEEIYWTHFQFIHFIQFLRNDFQQQLELPKTFSNNVKKKLPENVTLKGPSGVVWNIGITTRDDTVYFVDGWQRFVKDHSLKENDFLLFKYNGESLFEVLIFDGESNCEKAVSYFVGKCDNVKAGQRGRKAKDTNTSAEEVITASDGGSSEKFRRRNNIGTPLAVPFETTNEKTSNAGVESDSPEQFMADAVTKTAPAALPSQRTSKRAAKKPADDVVPPPARKRGRPPRAASSSGTGLDLVPFNSEAFNKELSG 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00268 269 MobiDBLite consensus disorder prediction 179 196 - -
Trre1g00268 269 MobiDBLite consensus disorder prediction 144 174 - -
Trre1g00268 269 MobiDBLite consensus disorder prediction 222 237 - -
Trre1g00268 269 Gene3D - 22 122 IPR015300 -
Trre1g00268 269 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 34 209 IPR044837 -
Trre1g00268 269 ProSiteProfiles B3 DNA-binding domain profile. 26 119 IPR003340 GO:0003677
Trre1g00268 269 MobiDBLite consensus disorder prediction 209 269 - -
Trre1g00268 269 SMART B3_2 29 119 IPR003340 GO:0003677
Trre1g00268 269 CDD B3_DNA 28 117 IPR003340 GO:0003677
Trre1g00268 269 MobiDBLite consensus disorder prediction 179 198 - -
Trre1g00268 269 Pfam B3 DNA binding domain 38 117 IPR003340 GO:0003677
Trre1g00268 269 SUPERFAMILY DNA-binding pseudobarrel domain 25 117 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00268 Trre-Chr1 1958411 1959875 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00268 15 133 REM Transcription Factor Family AT4G33280 57.500 8.63e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g00268 B3 4e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00268 - - psat:127093533 360.147