Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00266 ATGGTGGGAGGTGTGTGCAGATCTTGGGAGGAAGACATTTACTGGACCCATTTTCAATTCATCCATTTCACACAATTTCTTCGTAATGATTTTCATCAACAACTTGCACTTCCCAAAACATTTTCAAACAATGTCAAAAAGAAGTTGCCCGAAAATGCGGTCCTAAAAGGTCCTGGTGGAGTTGTGTGGGATATAGAGCTGACAACTAGAGACGGTATCGTGTACTTCACGAACGGTTGGCAACAATTTGTGAAAGATCACTCTTTGAAAGAGAATGATTTCCTTGTCTTTAAGTACAATGGCGAGTCATTGTTTGAGGTTTTAATCTTTGACGGGGAGAGTTTCTGTGAGAAGGCGGCTTCTTATTTTGTTCGAAAATGTGGGCATGCTGCCAATACTGAACAAGGGGGTGGATGTAATTCTAGCAAGAAAAAGGACACAGATAATTCCGTTGAAGAAGTCACTACTCCTTCGGATGGTGTTGATGAAGGTGTTTCACCTGAAAAATCCTCACATCTAAACAGTATCCGAGTGCCGTTTGCTGTACCTGTCGAAACCACCAACGGAAAGACTTCTAATGGTGGTGTTGAATCTGCCTCCCGCGAGCAATTCATAGCCGATGCGGTCACCGAGACTGAGCCTGCAGATGAACCCACTCAAAACACCGGTAAACGGACAAGGAGACCTGTTCATACGTCTGTCCCAAGTAAGAAGAGAGGAAGACCGCCGGGAAGACCACCAAAAACATCTAATCCTGATGAGAGAGCTCTTAATTGGGTCGCCGATGCTGAAATTTCTCCTAAGGGTTCTCCAAAGGGTAGAGCTGGGGCACCGGAACTATATACCTCAAATAGAAGGCCTGTCACAAAAGCTGAGATTGAAAATACTCTTCAGTTGGCCCAGGCAGCATGTACCGACGAATCCTTGCTTGTTACTATGCGACCTTCACATGTATACAAGAGATTCTTCGTGTCATTCCCAAATAAGTGGATACTAAACCATCTTTCTCCATCATCTCAAGACGTGGTATTACGCATGGGTAAGAAAGAATGGCTTGGGAAATACTTGTATCATAATATTCGTAACAATGGAGGACTTACTGGTGGGTGGAAATATTTTGCCCTCGACAATAACCTTGAAGAGTTCGATGTGTGTTTGTTTAAACCAGCTGGTCATATGCATGAATTATTGGTCTTAGAAATGAGCATTTTTAGAGTCGTTGAGCAGATTACTCCTCTTACTGCGGTGAATTCTCCAGGAAAGAAGAGGGGAGTTAAGAGAACCCCGCCTGGTGCTAGCCAAAAAGAACTCGAGTCCATTGAAGGAAAGAAGAGGGGAGTGAAGCGAACACTGACCAATGGTGTCCAAACAGAACTCGAGTCCATTGAAGGTGCGTAA 1398 0.4406 MVGGVCRSWEEDIYWTHFQFIHFTQFLRNDFHQQLALPKTFSNNVKKKLPENAVLKGPGGVVWDIELTTRDGIVYFTNGWQQFVKDHSLKENDFLVFKYNGESLFEVLIFDGESFCEKAASYFVRKCGHAANTEQGGGCNSSKKKDTDNSVEEVTTPSDGVDEGVSPEKSSHLNSIRVPFAVPVETTNGKTSNGGVESASREQFIADAVTETEPADEPTQNTGKRTRRPVHTSVPSKKRGRPPGRPPKTSNPDERALNWVADAEISPKGSPKGRAGAPELYTSNRRPVTKAEIENTLQLAQAACTDESLLVTMRPSHVYKRFFVSFPNKWILNHLSPSSQDVVLRMGKKEWLGKYLYHNIRNNGGLTGGWKYFALDNNLEEFDVCLFKPAGHMHELLVLEMSIFRVVEQITPLTAVNSPGKKRGVKRTPPGASQKELESIEGKKRGVKRTLTNGVQTELESIEGA 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00266 465 CDD B3_DNA 22 111 IPR003340 GO:0003677
Trre1g00266 465 ProSiteProfiles B3 DNA-binding domain profile. 309 407 IPR003340 GO:0003677
Trre1g00266 465 MobiDBLite consensus disorder prediction 185 199 - -
Trre1g00266 465 MobiDBLite consensus disorder prediction 132 256 - -
Trre1g00266 465 SUPERFAMILY DNA-binding pseudobarrel domain 19 111 IPR015300 -
Trre1g00266 465 SUPERFAMILY DNA-binding pseudobarrel domain 310 394 IPR015300 -
Trre1g00266 465 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 28 409 IPR044837 -
Trre1g00266 465 Gene3D - 288 410 IPR015300 -
Trre1g00266 465 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677
Trre1g00266 465 Gene3D - 16 116 IPR015300 -
Trre1g00266 465 SMART B3_2 309 407 IPR003340 GO:0003677
Trre1g00266 465 SMART B3_2 23 113 IPR003340 GO:0003677
Trre1g00266 465 Pfam B3 DNA binding domain 311 395 IPR003340 GO:0003677
Trre1g00266 465 Pfam B3 DNA binding domain 31 111 IPR003340 GO:0003677
Trre1g00266 465 CDD B3_DNA 312 405 IPR003340 GO:0003677
Trre1g00266 465 MobiDBLite consensus disorder prediction 417 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00266 Trre-Chr1 1950024 1953410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00266 6 405 REM Transcription Factor Family AT4G33280 34.951 2.46e-68 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g00266 B3 8e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00266 - - tpra:123885991 863.988