Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00263 ATGCTAAGAGGTGAAATCGTTGGTTCCAAAAGCGCGAGGCACGCCACCACCGCCACCGTATCTTCGAATAAAGTTCTTGTGGCGGTTAAAGCGGAGAAAGTGATCTCTAACACAGCATTAGCATGGGCGCTTACTCACATCGTTCATTCCAGCGACTCAATCACACTTCTCGCCGTTTATTCAACAGAAAAAACCGGAAGAAGAAGATTCTGGAATGTTTCGAGACTTATGGCCGGAAATTGTTCGAATGGACGCGCGGGAAAGTCGCCGGAGGAGATTTCTGATATCTCTGAGTCTTGTGCTCAGATGGTTTTTCAGTTACACAATCACATTGAGGTTAGAGTGAAGATTAAGGTAGTCACGGGAACTCCCAGTGGTGCTGTGGCGGCTGAAGCTAGATGGAGTGGTTCACATTGGGTCATACTGGACAAGAAATTAAAGCAAGAAATAAAACATTGCATGGATGAACTCAGCTGTAGCATTGTGGTGATGAATGGCTCACAGCCTAAAGTCCTCAGACTTAATTTAGGAGGACACTTCGATGAACTACAAACTCCATTTTTCTCTTCTTCCTCTTCACCAGGTATACAAACTGGAAAGCTAAAAGGCCGCAGATTGAAGCATTCCACCCCAGTTGGTAGCCCTGAAGTAACAGGTTCTTCTGTTACAAGAAGTATTGGAGTAGATTCAGTGTCGAGTTCAGACTCAATGACTTCTCCTTTCCTGGTCTATAAAGAAAACCCTCTGTATGAGGGCCATGGATCACACAAATCAACAAACAAATCAATCAATAAGCCAAAAGATTTCAACTTCCAGCCACCATACTTTAATTTGGAAAGGGATAGCCCACCCCCTTCAAGGAAACTCCCAACATCATCTCTGGCTAGTGATAAGAACACTGAATTTTGGATCCATCAGAACCACATTAATAATGAGAAGCTTCAAAGAGCTGAAAACAGAATCATTCCAAGAACTAAATCTCCAAATTCTAAAACTTTACTTGAGAATTTTTTTCACTGTGATCAAGAGAAGAGAACAAATGAACTTGAGTTTAACAAAGCTGAAAATAGAAGTTATGTCACCAGCCCAAGCATCAGAGATAGCCCTATTCCTTTGGGTAGAAATTCCTCGATACCTCCTCCCTTGTGCTCACAGTGTCAGAATATAGCACCTGTATTTGGAAATCCTCCTAGACGGTTTTCTTACAGAGAGATAGAAGAAGCTACTGACATGTTCTCAGATTTGAATTTTTTGGCTGAAGGTGGATTTGGTGTGGTTCACAGAGGGATACTCAAAGATGGTCAGGTTGTTGCAGTGAAACAATTAAAATCTAGTGGCTCTCAAGCAGATCTTGATTTCTGCAGGGAAGTTCGGGTTTTGAGTTGTGCACAACACAGAAATATTGTATTGCTGATAGGATTTTGCACAGAGGACAATGTGAGGATATTAGTCTATGAGTACGTATGTAATGGATCCTTGGACCTCTGCTTACACGGCAAAGAGGGTATACCTTTGGATTGGAACTCACGGTTAAAGATAGCGATTGGAGTTGCACGAGGCTTACGCTATCTCCATGAAGATTGTAGAGTTGGTTGTATAGTGCACAGAGACATTCGTCCCAAAAATATCCTCTTAACCCATGACTTTGAACCTCTGGTGGCTGATTTTGGGCTTGCAAGATGGCAATCAGAATGGAATATAAATACTGAAGATCGCGTTATGGGAACTTCAGGGTACATTGCACCGGAGTATCTTGATTCTGGAATTCTTACGTATAAAGTAGATGTATATGCATTTGGAATTGTTTTATTAGAGTTAATAACAGGTCGAAGAAATAATGAGTTGGAACAGTTCAATGGACATTCATATCTTTCTGAATGGTTACACCCCCTACACATGTTGGACCCCAATCATATCTTACGAAATGTTGGATCCCTCAACCCATGCTTGGATTCTGAGAGGTCACTAGAATCTAATCTTCAATTGCAAGCCATGACACAAGCTGCTTCATTGTGTTTACGTTTGGATCCTGATCATAGACCTCCAATTTCAAAGATCCTCAGAGTGCTGGAAGGGGGAAATCCAGTTCGTCCATTGGATTTAGACATCAATTCAATTGGTAACGCAAGTGGACGTTTAAGTGGTTTGAGTTCGTATACTCCTCCTAAAGGTACAATAAGCCATTCTCGTATGTTATCACATTGA 2205 0.4168 MLRGEIVGSKSARHATTATVSSNKVLVAVKAEKVISNTALAWALTHIVHSSDSITLLAVYSTEKTGRRRFWNVSRLMAGNCSNGRAGKSPEEISDISESCAQMVFQLHNHIEVRVKIKVVTGTPSGAVAAEARWSGSHWVILDKKLKQEIKHCMDELSCSIVVMNGSQPKVLRLNLGGHFDELQTPFFSSSSSPGIQTGKLKGRRLKHSTPVGSPEVTGSSVTRSIGVDSVSSSDSMTSPFLVYKENPLYEGHGSHKSTNKSINKPKDFNFQPPYFNLERDSPPPSRKLPTSSLASDKNTEFWIHQNHINNEKLQRAENRIIPRTKSPNSKTLLENFFHCDQEKRTNELEFNKAENRSYVTSPSIRDSPIPLGRNSSIPPPLCSQCQNIAPVFGNPPRRFSYREIEEATDMFSDLNFLAEGGFGVVHRGILKDGQVVAVKQLKSSGSQADLDFCREVRVLSCAQHRNIVLLIGFCTEDNVRILVYEYVCNGSLDLCLHGKEGIPLDWNSRLKIAIGVARGLRYLHEDCRVGCIVHRDIRPKNILLTHDFEPLVADFGLARWQSEWNINTEDRVMGTSGYIAPEYLDSGILTYKVDVYAFGIVLLELITGRRNNELEQFNGHSYLSEWLHPLHMLDPNHILRNVGSLNPCLDSERSLESNLQLQAMTQAASLCLRLDPDHRPPISKILRVLEGGNPVRPLDLDINSIGNASGRLSGLSSYTPPKGTISHSRMLSH 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00263 734 Gene3D Phosphorylase Kinase; domain 1 386 487 - -
Trre1g00263 734 FunFam Os07g0541700 protein 488 576 - -
Trre1g00263 734 MobiDBLite consensus disorder prediction 254 293 - -
Trre1g00263 734 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 384 487 - -
Trre1g00263 734 SUPERFAMILY Protein kinase-like (PK-like) 390 692 IPR011009 -
Trre1g00263 734 PANTHER OS01G0750732 PROTEIN 300 695 - -
Trre1g00263 734 Gene3D HUPs 7 173 IPR014729 -
Trre1g00263 734 ProSiteProfiles Protein kinase domain profile. 412 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00263 734 MobiDBLite consensus disorder prediction 714 734 - -
Trre1g00263 734 SMART tyrkin_6 412 690 IPR020635 GO:0004713|GO:0006468
Trre1g00263 734 ProSitePatterns Tyrosine protein kinases specific active-site signature. 533 545 IPR008266 GO:0004672|GO:0006468
Trre1g00263 734 Gene3D Transferase(Phosphotransferase) domain 1 488 696 - -
Trre1g00263 734 MobiDBLite consensus disorder prediction 191 221 - -
Trre1g00263 734 Pfam Protein tyrosine and serine/threonine kinase 418 689 IPR001245 GO:0004672|GO:0006468
Trre1g00263 734 CDD STKc_IRAK 418 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00263 Trre-Chr1 1902540 1913354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00263 392 715 Trihelix Transcription Factor Family AT1G70460 42.813 3.50e-74 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Trre1g00263 PK_Tyr_Ser-Thr 2.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00263 - - gmx:100813141 1137.87