Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00258 ATGTTGCGTTATTCGGACCGATTGATATTAAACATCATGGAAGATGTTCCTATGTTTGCTTCGAATAACGATAATGATTCGGTTGATGTTGATTTATCTAATGAAGTTGTTAATAATTTGTTGGGAAATTTAACAAGTAGAGCTGTGAAAGGTGATTCTAGGATTAAATATGCTGCATCAAGTTTACCTGGTCCTAAGTATGAGGTTATATATGGTTTAGTTCAGTGTACACCTGATTTGTCAGAGACTGATTGCAATTCATGTTTGGTTAAGAGTCTTCAACAAATTCCAAGTTGTTGTAAAAATAAGATTGGTGGAAGAGTTGTTAGGCCTAGTTGTAATATGAGATTTGAGACTTCTTTTCTTTTCTATGAACCTAGAGCGTCGCCGCCGCCGCCACCACCATCTCCTCCTCCATCCACCACCACTGGTAGCAACACTACCTCACAAGGAAAAAGCAACAACAATAGTAGTAGTACCATTGGCATTGCTGTAGGAGTACCAATTGCTATCGTTGTTATGGTCTTCATTTTTTTCTTTATCTATTTAAGACTAAGGAGGCCAAAGAAAAGGTTTGAAGAAATTCAAGAAGAAGAAGATGAAGAAGACAAAATTGAAATTTCCGAACCCTTGCAGTTCAACTTCAACACCATATGTAGCGCTACAAATGACTTCTCTAATTCTAATAAACTTGGAGAAGGCGGATTCGGGATTGTTTACAAAGGTAGGCTTTCTAATGGAGAAGAGATTGCTGTCAAAAGGTTGTCGATGAATTCTGGACAAGGAGATTCAGAGTTTAAGAATGAGGTGGTTTTAGTGGCTAAGCTTCAACACCGAAATTTAGTTAGACTACTCGGTTTTTGTCTTGAAGGAAGAGAAAGAGTACTTGTATATGAGTTTGTTCATAATAAAAGTCTTGATTACTTTATTTTTGATCAAGCTAAGAGAGCACAATTAAATTGGGAATTGCGCTACAAAATCATTTTAGGTATTGCTCGAGGCATTCTGTATCTTCACGAGGATTCTCGACTACGCATTATTCATCGTGATCTCAAAGCAAGTAACATTCTTTTAGACGAAGAGATGAATCCTAAGATAGCCGATTTTGGCATGGCAAGACTATTTGTTGTGGACCAAACTCAAGAAAAGACAAATAGAATTGTGGGAACCTATGGATATATGGCACCTGAGTACGCAATGCATGGACAATTTTCAGTGAAGTCGGATGTCTTCAGTTTTGGTATATTGGTTCTTGAAATTGTAAGTGGTACAAAAAATAGCGGCATTCGTGATGAGGAGAATACAGAGTATCTCTCGAGCTTTGCATGGAGAAATTGGAAGGAAGGTACTGCAACAAATATCATAGATCCCACATTAAACAATGATTCAAGAAATGAAATAATGAGATGTATCCATATTGGATTACTCTGTGTTCAAGAAAATGTAACTAGTAGGCCAACCATGGCTTCTGTTGCAGTAATGCTTAATAGTCATTCTGTCACTCTTCCAATGCCTTTGGAACCTGCATTTCATATGGATAGTGGAAATATGAAATCATGGGGTCATAGTTCAGCTCAAGAATCAGTTAATGATGCTTCAAATACAGAGTTATATCCTCGCTAG 1623 0.3728 MLRYSDRLILNIMEDVPMFASNNDNDSVDVDLSNEVVNNLLGNLTSRAVKGDSRIKYAASSLPGPKYEVIYGLVQCTPDLSETDCNSCLVKSLQQIPSCCKNKIGGRVVRPSCNMRFETSFLFYEPRASPPPPPPSPPPSTTTGSNTTSQGKSNNNSSSTIGIAVGVPIAIVVMVFIFFFIYLRLRRPKKRFEEIQEEEDEEDKIEISEPLQFNFNTICSATNDFSNSNKLGEGGFGIVYKGRLSNGEEIAVKRLSMNSGQGDSEFKNEVVLVAKLQHRNLVRLLGFCLEGRERVLVYEFVHNKSLDYFIFDQAKRAQLNWELRYKIILGIARGILYLHEDSRLRIIHRDLKASNILLDEEMNPKIADFGMARLFVVDQTQEKTNRIVGTYGYMAPEYAMHGQFSVKSDVFSFGILVLEIVSGTKNSGIRDEENTEYLSSFAWRNWKEGTATNIIDPTLNNDSRNEIMRCIHIGLLCVQENVTSRPTMASVAVMLNSHSVTLPMPLEPAFHMDSGNMKSWGHSSAQESVNDASNTELYPR 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00258 540 MobiDBLite consensus disorder prediction 124 157 - -
Trre1g00258 540 ProSiteProfiles Gnk2-homologous domain profile. 15 122 IPR002902 -
Trre1g00258 540 ProSiteProfiles Protein kinase domain profile. 225 501 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00258 540 Gene3D - 18 121 IPR038408 -
Trre1g00258 540 Pfam Protein tyrosine and serine/threonine kinase 228 492 IPR001245 GO:0004672|GO:0006468
Trre1g00258 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 346 358 IPR008271 GO:0004672|GO:0006468
Trre1g00258 540 SUPERFAMILY Protein kinase-like (PK-like) 207 495 IPR011009 -
Trre1g00258 540 MobiDBLite consensus disorder prediction 126 141 - -
Trre1g00258 540 MobiDBLite consensus disorder prediction 142 157 - -
Trre1g00258 540 ProSitePatterns Protein kinases ATP-binding region signature. 231 253 IPR017441 GO:0005524
Trre1g00258 540 FunFam Cysteine-rich receptor-like protein kinase 28 301 503 - -
Trre1g00258 540 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 37 535 - -
Trre1g00258 540 Gene3D Phosphorylase Kinase; domain 1 188 300 - -
Trre1g00258 540 Pfam Salt stress response/antifungal 35 119 IPR002902 -
Trre1g00258 540 FunFam Cysteine-rich receptor-like protein kinase 10 17 121 - -
Trre1g00258 540 SMART serkin_6 225 501 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00258 540 CDD STKc_IRAK 231 496 - -
Trre1g00258 540 FunFam Cysteine-rich receptor-like protein kinase 17 193 300 - -
Trre1g00258 540 MobiDBLite consensus disorder prediction 517 540 - -
Trre1g00258 540 Gene3D Transferase(Phosphotransferase) domain 1 301 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00258 Trre-Chr1 1872586 1875390 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00258 1 540 Receptor kinase-like Gene Family AT4G21410 52.252 0.0 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre1g00258 PK_Tyr_Ser-Thr 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00258 - - gmx:100791056 648.662