Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00257 ATGTCTATGGCTATGCATATAATTTCCTTTCTCTTCCTAATCATAATTTTTCCATCAATAAAATTAGCCAACGCCAATAACACCACACAAAACTTCCACTACTTTTGTAATTTTAACAATAGAGGTAACTATACAGCCAACAGCATCTACCACACAAACCTTAACACCCTTTTATCCACTCTCACTTCCAACAATAAAATCAACAACTACGGTTTCTACAATTTCTCAAATGGCGAAAACACAAACAAAGTAAACGCTATTGGTCTTTGCAGAGGCGATGTTAAACAAAACGAGTGTCTTAGTTGCCTTAAAAGTTCAACCAACAATCTCACACAGCTTTGTCCCAACCAAAAAGAAGCTATTGGTTGGTATGAAGACGAAAAATGCATGTTGCGTTATTCTGACCGATCGATATTTGGTTCATTGGAAACAGGACCTGCATATTATGCAAACAATATGTTAAATGCAACTGATTTGAATGAGTTCAATCAAGTTGTCCGTAACTTGCTTGATAATTTGACTAACAAAGCTTCATCCGGTGATTCGAGTTTGAAATATGCCGCGGATAGTGCACGCGGTCCTAATGATCAAACTATATATGGTCTTGTTCAGTGTACGCCCGATTTGTCCGAGTCAGATTGCAATTCATGTTTGGTTCAATCTATTGCAAGAATACCAATTGATTGTTGCAAAGATAAGATTGGTGGAAGAGTTGTTAGGCCTAGTTGTAACATGAGATTTGAAACATCTTTCCTCTTCTATGATCCTATAGCAACACCACCACCACCACCACCACCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCAGGAAAGAGCCACACTATCACTATCATTGCCATAACAGTACCAATTGGTTCTGTTATGGTGCTCATTTTAATCTGCCTCTATTTAAGAGTAAGGAAGCCAAGCAAAAGGTTTAGAATTAAAGAAGAAGAAGATGATGAGATTGAAATTTCTGAGTCATTGCAATTCAACTTTGACACAATAAAAGAGGCAACAGATGACTTTTCTGATTCTAATATACTTGGACAAGGTGGATTTGGGACAGTTTATAGAGGTAGACTCCCCAATGGTCAAGAGATTGGTGTCAAAAGGTTGTCAAGGGATTCTGGCCAAGGAGATTTAGAATTTAAGAACAAAGTGCTTTTAGTGGCTAAACTTCAACACCGAAATTTAGTTAGACTACTCGGTTTTTGTATAGAAGGAAGAGAAAGACTACTTGTATATGAATTTGTTCATAATAAGAGTCTTGATTACTTCATTTTTGATCAAGCTAAGAGAGCTGACTTAAATTGGGAAAGGCGCTATAAAATCATTTTAGGTATTGCTCGAGGAATTATTTACCTTCATGAAGATTCCCGGCTACGTATTATCCATCGCGATCTTAAAGCAAGCAACATTCTCTTAGATGAAGAGATGAATCCAAAGATAGCAGATTTTGGCATGGCTAGACTATTTGATGTGGACCAAACTCAGGAAAATACAAGTAGAATTGTGGGAACCTATGGATATATGGCACCTGAGTATGCAATGCATGGACAATTTTCAGTGAAGTCAGATGTATTCAGTTTTGGCGTATTGATTCTAGAGATTATAAGTGGCCACAAAAACAGTGGCATTCGTCGTGGGAGTACTACAGAGTATCTACTATGCTTTGTATGGAGAAACTGGAGGGATGGATCACCTACAAATATTATAGATCCCACATTAGTCAATGATTCAGTGAATGAAATAATGAGATGCATCCACATTGGATTACTATGTGTTCAAGAAAATGCAGCTAGTAGGCCAACTATGGCTTCTGTTGTACTAATGCTTAATAGTCACTCTCTCCCTCTTTCAAGACCTTCAGAACCTGCATTTTTTGTGGGAAGTGAAGTTGGAGACTTTCAAAATTACACGATGAAATCATCAGAATATAATTCGGTTCAAGGATCCGTAGATGAGGCTCCGATTACAGAGCCATATCCTCGCTAG 2004 0.3817 MSMAMHIISFLFLIIIFPSIKLANANNTTQNFHYFCNFNNRGNYTANSIYHTNLNTLLSTLTSNNKINNYGFYNFSNGENTNKVNAIGLCRGDVKQNECLSCLKSSTNNLTQLCPNQKEAIGWYEDEKCMLRYSDRSIFGSLETGPAYYANNMLNATDLNEFNQVVRNLLDNLTNKASSGDSSLKYAADSARGPNDQTIYGLVQCTPDLSESDCNSCLVQSIARIPIDCCKDKIGGRVVRPSCNMRFETSFLFYDPIATPPPPPPPPPLPPPPPPPPPGKSHTITIIAITVPIGSVMVLILICLYLRVRKPSKRFRIKEEEDDEIEISESLQFNFDTIKEATDDFSDSNILGQGGFGTVYRGRLPNGQEIGVKRLSRDSGQGDLEFKNKVLLVAKLQHRNLVRLLGFCIEGRERLLVYEFVHNKSLDYFIFDQAKRADLNWERRYKIILGIARGIIYLHEDSRLRIIHRDLKASNILLDEEMNPKIADFGMARLFDVDQTQENTSRIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLILEIISGHKNSGIRRGSTTEYLLCFVWRNWRDGSPTNIIDPTLVNDSVNEIMRCIHIGLLCVQENAASRPTMASVVLMLNSHSLPLSRPSEPAFFVGSEVGDFQNYTMKSSEYNSVQGSVDEAPITEPYPR 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00257 667 MobiDBLite consensus disorder prediction 256 281 - -
Trre1g00257 667 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 36 656 - -
Trre1g00257 667 Gene3D - 146 251 IPR038408 -
Trre1g00257 667 Gene3D - 30 137 IPR038408 -
Trre1g00257 667 SMART serkin_6 345 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00257 667 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 29 138 - -
Trre1g00257 667 CDD STKc_IRAK 351 616 - -
Trre1g00257 667 ProSiteProfiles Gnk2-homologous domain profile. 144 252 IPR002902 -
Trre1g00257 667 Pfam Protein tyrosine and serine/threonine kinase 349 613 IPR001245 GO:0004672|GO:0006468
Trre1g00257 667 SUPERFAMILY Protein kinase-like (PK-like) 326 615 IPR011009 -
Trre1g00257 667 Gene3D Phosphorylase Kinase; domain 1 308 420 - -
Trre1g00257 667 FunFam cysteine-rich receptor-like protein kinase 10 421 622 - -
Trre1g00257 667 FunFam Cysteine-rich receptor-like protein kinase 10 146 251 - -
Trre1g00257 667 Gene3D Transferase(Phosphotransferase) domain 1 421 622 - -
Trre1g00257 667 Pfam Salt stress response/antifungal 36 135 IPR002902 -
Trre1g00257 667 Pfam Salt stress response/antifungal 156 249 IPR002902 -
Trre1g00257 667 ProSiteProfiles Gnk2-homologous domain profile. 32 138 IPR002902 -
Trre1g00257 667 ProSiteProfiles Protein kinase domain profile. 345 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00257 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Trre1g00257 667 FunFam Cysteine-rich receptor-like protein kinase 10 308 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00257 Trre-Chr1 1865603 1868545 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00257 5 667 Receptor kinase-like Gene Family AT4G21410 50.581 0.0 626
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre1g00257 PK_Tyr_Ser-Thr 2.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00257 - - var:108324787 825.469