Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00256 ATGTCTGGTTTGTTACCTTCCATTAAGCTCCATGCCTTAATTTGTTATCTCCTTCTCTTAATCATTTTATCATCATCACAATTAGCAAATGCTGCAAACAACACACAAAACTTTCACTACTTCTGTAATTCTAACAACAGAGGTAACTATACAGTTAAAAGCACATACCACAAAAACCTTAAAACACTTTTGTCTAATCTCACTTCCAACACAAAAATCAACAACTATGGTTTCTACAATTTCTCAAACAACCAAAACATAAACAGAGACAGAGTAAATGCAATCGGTCTTTGCAGAGGCGATGTTAAGCCAAACGAGTGTCTTAGTTGCCTCAAAAGTTCAAGCAATAATCTCACACTGCTTTGTCCATACCAAAAAGAAGCAATTGGTTGGTACGAAGACGAAAAATGCATGCTGCGTTATTCGGACCGTTTGATATTTGCCTCGGTAATGGAAACAAGACCTGTTTATTATGCAGATAACATGGTGAATGCAACTGATTTGAATGAGTTTAATTCAGTGGTTAGGAACTTGTTGTATAACTTGACAAGTAGAGCTTCATCGGGTGATTCTCGTTTAAAATATGCCGCGGGGAGTACGAGTGGTCCTAATGATCAAACTATATATGGTCTTGTGCAGTGTACTCCTGATTTGTTTGAGTCTCAATGCAGTGATTGTTTGGTTCAATCTATCGCGCGTATAGCAATTGATTGTTGTAAAGATAAGAAAGGTGGAAGAGTTGTTAGGCCTAGTTGTAGTATGAGATTTGAAACAAATTTCCTCTTCTATGAATCTACAGCACCATCACCTCCTCCTCCATCCACCATCAAGAACACTTCCTCACAAGGAAAGAGCAACATTACCACTGTTATCGCCATAGCAGTACCGGTTGTTGCTGTTATGGTGCTCATCATTATCTGCATCTATTTAAGAGTAAGGAAGTCAAGGAAAAAGTTTAAAACACAAGAAAATGAAGATGATGAAATTGAAATTTCTGAGTCATTGCGATTCAACTTCGACACAATAAGAGATGCAACAAATGACTTTGTTGAATCTAATAAACTTGGACAAGGTGGATTTGGGATTGTTTACAAAGGTAGGCTCTCCACTGGACAAGAGATTGCTGTCAAAAGCCTTGACTACTTCATTTTTGATCAAACCAAGAGAGCACAGTTAAATTGGGAAATAAGGTATAAAATCATTGCAGATGAAGAGATGAATCCAAAGATAGCGGATTTTGGCATGGCTAGATTGTTTGGTGTGGGCCAAACTCAGGAAAATACAAATAGAATTGTGGGAACCTACGGATATATGGCACCTGAGTATGTAATGCATGGACAATTTTCAGTGAAGTCAGATGTGTTTAGTTTTGGTGTATTGATTCTTGAGATTATAACTGGCTACAAAAATAGTTGCATTCGCTGCGGGGAGAGTATGGAGTATCTACTGAGCTTTGTATGGAGAAATTGGAGGGAGGAGTCCCTAACAAATGTTATAGATCCCACATTAAACAATGAGTCAGTGAATGAAATAGTGAGATGCATCCATATTGGGTTACTTTGTGTTCAAGAAAATGCAGCTATCAGGCCAAATATGGCTTCTATTGTACTAATGCTTAATAGTCATTCTCTCACTCTTTCAAGACCTTCGGAACCTGCATGCATTTTATGTGGGAAGTGGAGTTGGAGAATTTCAAGATTACATGATGAAATCATCAGAGTATAA 1725 0.3768 MSGLLPSIKLHALICYLLLLIILSSSQLANAANNTQNFHYFCNSNNRGNYTVKSTYHKNLKTLLSNLTSNTKINNYGFYNFSNNQNINRDRVNAIGLCRGDVKPNECLSCLKSSSNNLTLLCPYQKEAIGWYEDEKCMLRYSDRLIFASVMETRPVYYADNMVNATDLNEFNSVVRNLLYNLTSRASSGDSRLKYAAGSTSGPNDQTIYGLVQCTPDLFESQCSDCLVQSIARIAIDCCKDKKGGRVVRPSCSMRFETNFLFYESTAPSPPPPSTIKNTSSQGKSNITTVIAIAVPVVAVMVLIIICIYLRVRKSRKKFKTQENEDDEIEISESLRFNFDTIRDATNDFVESNKLGQGGFGIVYKGRLSTGQEIAVKSLDYFIFDQTKRAQLNWEIRYKIIADEEMNPKIADFGMARLFGVGQTQENTNRIVGTYGYMAPEYVMHGQFSVKSDVFSFGVLILEIITGYKNSCIRCGESMEYLLSFVWRNWREESLTNVIDPTLNNESVNEIVRCIHIGLLCVQENAAIRPNMASIVLMLNSHSLTLSRPSEPACILCGKWSWRISRLHDEIIRV 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00256 574 Pfam Protein tyrosine and serine/threonine kinase 401 537 IPR001245 GO:0004672|GO:0006468
Trre1g00256 574 ProSiteProfiles Protein kinase domain profile. 276 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00256 574 Gene3D Phosphorylase Kinase; domain 1 318 401 - -
Trre1g00256 574 Pfam Salt stress response/antifungal 42 143 IPR002902 -
Trre1g00256 574 Pfam Salt stress response/antifungal 164 258 IPR002902 -
Trre1g00256 574 SUPERFAMILY Protein kinase-like (PK-like) 337 552 IPR011009 -
Trre1g00256 574 Gene3D Transferase(Phosphotransferase) domain 1 402 543 - -
Trre1g00256 574 ProSiteProfiles Gnk2-homologous domain profile. 153 261 IPR002902 -
Trre1g00256 574 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 419 544 - -
Trre1g00256 574 FunFam Cysteine-rich receptor-like protein kinase 10 155 260 - -
Trre1g00256 574 ProSitePatterns Protein kinases ATP-binding region signature. 355 377 IPR017441 GO:0005524
Trre1g00256 574 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 35 146 - -
Trre1g00256 574 Gene3D - 34 145 IPR038408 -
Trre1g00256 574 Gene3D - 154 260 IPR038408 -
Trre1g00256 574 ProSiteProfiles Gnk2-homologous domain profile. 38 146 IPR002902 -
Trre1g00256 574 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 403 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00256 Trre-Chr1 1853705 1856506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00256 11 556 Receptor kinase-like Gene Family AT4G21410 40.061 7.46e-140 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre1g00256 PK_Tyr_Ser-Thr 2.4e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00256 - - gmx:113000774 585.104