Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00245 ATGACCGATGCGGAGCCTGATATAATTAGTACTTTACCGGGTCATATAATAGACCATATTCTATCACATTTGCCGATTAAAGAAGCAGTGAGAACAAGTATTTTATGTACCAAATGGAGGTACAAATGGGTGACACTTCCAAATCTTGTGTTTGATAGCCAATGTATCTCTGAAACTTCTGAAGACCTTTTAGATATCAAGAGCAAGCTTTCGAGAATTATTGATCATGTGCTTTTACTCCATTCTGGGCCAATCAAAAAGTTCAAGCTCTCCCATCGTGAACTCATTGGTGTGACTGATATTGATCGGTGGACTCTTCATCTAACTAGAAGGCCTGTGAAAGAGTTTGTGCTAGAAATCTGGAAAGGGCAACGCTATAAGATACCTACATGCTTATTTTCCTGTCAAGGTTTACATCATTTAGAATTATTTAACTGTTGGCTTAAACCACCGTCAACATTTCAAGGCTTCAGAAACTTGAAGAGTCTTGATTTGCAACATGTTACATTGGCTCAAGATGCTTTTGAAAACTTGATATCCAGTTGCCCCCTGCTTGAACGATTGACGTTGATGAACTTCGATGGTTTCAACCATCTTAACATTCATGCCCCAAATCTGCAGTTTTTTGACATTGGGGGTAAGTTTGACGATATTAGCTTTGAGAACACTTCTCAATTAGCTGTGGTATCCATTGGTCTGTATGTAAACTTCGAATACAATCAAAGTAGATTGCATGGACGCTCTAGCAATTTGGTTGAATTTTTAATTTGTCTACCTCGTATACAGAGGCTGGAGATTCAAAGCTATTTTTTGAAGTATTTGGCTATGGGCGTCGTTCCAGTGAACCTTCCTAGACCTTGCATTGATTTAAGCTATCTTTCCGTACGCATAAACTTCAATGATTCAAAGGAGATTTTAGCTGCTCTTTGCTTGCTCAGAAACTCACCTAATTTACGAGAATTAGAAATATTGGCACGGCCTGAGGAGCAGCGTATTCCATTTGCTCACCACCCATATTGTTGGGATGATGTCTATTTGGATTGGCCAGTCATGCGAGTGCAACATGTGAGACTAGATGGCATCTTTGGTATCAAACCTGAATTGGACTTCATCAACTTTCTACTTCAATATTCTCCTGTGCTAGAAAAGATGGCTGTGAAACCTGCTTTAAACGTCGGACCAGAGTTGATGAAAGAACTATTGCGGTTTAGGAGAGCCTCACCACGGGCTGAAGTTTACATGGACTAA 1248 0.3982 MTDAEPDIISTLPGHIIDHILSHLPIKEAVRTSILCTKWRYKWVTLPNLVFDSQCISETSEDLLDIKSKLSRIIDHVLLLHSGPIKKFKLSHRELIGVTDIDRWTLHLTRRPVKEFVLEIWKGQRYKIPTCLFSCQGLHHLELFNCWLKPPSTFQGFRNLKSLDLQHVTLAQDAFENLISSCPLLERLTLMNFDGFNHLNIHAPNLQFFDIGGKFDDISFENTSQLAVVSIGLYVNFEYNQSRLHGRSSNLVEFLICLPRIQRLEIQSYFLKYLAMGVVPVNLPRPCIDLSYLSVRINFNDSKEILAALCLLRNSPNLRELEILARPEEQRIPFAHHPYCWDDVYLDWPVMRVQHVRLDGIFGIKPELDFINFLLQYSPVLEKMAVKPALNVGPELMKELLRFRRASPRAEVYMD 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00245 415 PANTHER F-BOX PROTEIN-LIKE 7 389 - -
Trre1g00245 415 Pfam F-box domain 9 41 IPR001810 GO:0005515
Trre1g00245 415 SUPERFAMILY RNI-like 127 323 - -
Trre1g00245 415 SUPERFAMILY F-box domain 6 65 IPR036047 GO:0005515
Trre1g00245 415 Gene3D - 2 44 - -
Trre1g00245 415 Pfam Leucine Rich Repeat 159 183 IPR013101 -
Trre1g00245 415 Gene3D Ribonuclease Inhibitor 68 327 IPR032675 -
Trre1g00245 415 ProSiteProfiles F-box domain profile. 6 54 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00245 Trre-Chr1 1770640 1772454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00245 7 207 EF-hand Containing Proteins AT5G41840 25.105 4.04e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00245 - - gmx:100782183 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00245 1 1770640 1772454 Trre1g00245 1 1770640 1772454 ECH