Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00237 ATGGGTTGGCTTAGTAGAATTTTTAAAGGCTCTGACCATAAGGTTTCAGAAGGGCATTATTATAAAGACGATTCGAGTTATCACTTGCCGTCAACTTCAGGGGATGTTTGGGCTGAGAATGAGAATGAAGATATTGATCGTGCTATTGCATTGTCTTTAGCGGAAGACAATCATAAAGCGAAAAAAGTTAAAGACCACAAATCACAGTTAGAAGAAGATGAACAACTTGCCAGAGCTATAGAAGAAAGCCTAAATTTGGAGTCACCTCCCAAACATGGAAATGATAATAATAATAATAACATGTATCAACCAATTCAGTATTTTCCGATGGGGTACAGGATATGTGCTGGCTGCAATACTGAGATTGGTTATGGACGATATCTAAATTGCTTGGGTGCATTCTGGCATCCTGAATGCTTCCGCTGCCGTGCTTGCAACCTACCAATCTCTGATTATGAGTTTTCCACATCCGGAAATTACCCTTATCATAAAGCATGCTATAAGGAAAGCTACCATCCGAAATGTGATGTCTGCAAGCACTTCATTCCAACAAACCCTGCTGGTCTTATTGAATATAGGGCACACCCATTCTGGAACCAGCATTATTGCCCTTCACATGAACATGATAATACTCCTCGCTGTTGTAGCTGTGAGCGAATGGAGCCACAAGGGACAGGATATATTGCCCTTAAGGATGGAAGGAAGCTCTGCTTAGAGTGTCTTGATTCTTCTATCATGGATACTAACGAATGCCAGCCCCTTCATGCTGATATACTAAAGTTCTATGAAAGCATAAATATGAGACTGGATCAGCAAGTTCCTCTACTGTTGGTTGAAAGACAAGCACTTAACGAAGCAAGGGAGGGAGAGAAAAATGGCCACTATCACATGCCTGAGACCAGAGGACTCTGCCTCTCTGAGGAACTCAGCACTATTTCAAGACGACCTAGACTTGGGACAGGAAATAAAGCAATAGGCATGAGAACACAACCGTACAAAGTGACTGCTCGATGTGATGTTACAGCAATTCTCATTCTATATGGTCTTCCAAGATTACTTACCGGATCAATTCTAGCTCATGAGATGATGCATGCATGGCTGCGGCTATCAGGTTTCCGCACTCTTAGTCAAGACGTTGAAGAAGGTATCTGTCAGGTTTTGGCTCACATGTGGTTGGAGTCTGAGCTTTCTTCTGCATCAGGAAGCAATTTTGTACCAGGCTCATCTTCATCTGCATCATATACATCTAAGAAAGGTAAAAGACCTCCTTTTGAGAAGAAGCTTGGGGAGTTCTTCAAGCACCAGATTGAATCAGACATTTCCCCTGTTTATGGTGATGGATTTAGGGCAGGTCAAAAAGCAGTTCGCAAGTATGGCCTACAAAGAACCCTTCACCATATCAAGATGACGGGGAGTTTCCCATATGAAGTATAG 1434 0.4233 MGWLSRIFKGSDHKVSEGHYYKDDSSYHLPSTSGDVWAENENEDIDRAIALSLAEDNHKAKKVKDHKSQLEEDEQLARAIEESLNLESPPKHGNDNNNNNMYQPIQYFPMGYRICAGCNTEIGYGRYLNCLGAFWHPECFRCRACNLPISDYEFSTSGNYPYHKACYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWNQHYCPSHEHDNTPRCCSCERMEPQGTGYIALKDGRKLCLECLDSSIMDTNECQPLHADILKFYESINMRLDQQVPLLLVERQALNEAREGEKNGHYHMPETRGLCLSEELSTISRRPRLGTGNKAIGMRTQPYKVTARCDVTAILILYGLPRLLTGSILAHEMMHAWLRLSGFRTLSQDVEEGICQVLAHMWLESELSSASGSNFVPGSSSSASYTSKKGKRPPFEKKLGEFFKHQIESDISPVYGDGFRAGQKAVRKYGLQRTLHHIKMTGSFPYEV 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00237 477 SMART lim_4 114 166 IPR001781 -
Trre1g00237 477 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 141 203 - -
Trre1g00237 477 Coils Coil 53 83 - -
Trre1g00237 477 Pfam Ubiquitin interaction motif 71 84 IPR003903 -
Trre1g00237 477 Pfam Ubiquitin interaction motif 41 55 IPR003903 -
Trre1g00237 477 Gene3D Cysteine Rich Protein 111 174 - -
Trre1g00237 477 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 40 59 IPR003903 -
Trre1g00237 477 MobiDBLite consensus disorder prediction 399 422 - -
Trre1g00237 477 MobiDBLite consensus disorder prediction 399 417 - -
Trre1g00237 477 ProSiteProfiles LIM domain profile. 113 173 IPR001781 -
Trre1g00237 477 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 71 90 IPR003903 -
Trre1g00237 477 ProSitePatterns LIM zinc-binding domain signature. 115 149 IPR001781 -
Trre1g00237 477 Pfam Protein DA1 265 470 IPR022087 -
Trre1g00237 477 CDD LIM_DA1 115 167 - -
Trre1g00237 477 PANTHER PROTEIN DA1-RELATED 2 3 475 IPR045218 -
Trre1g00237 477 Pfam LIM domain 115 169 IPR001781 -
Trre1g00237 477 SMART uim 71 90 IPR003903 -
Trre1g00237 477 SMART uim 40 59 IPR003903 -
Trre1g00237 477 FunFam Protein DA1-related 1 109 168 - -
Trre1g00237 477 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 108 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00237 Trre-Chr1 1735737 1740156 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre1g00237 DA1-like 1.2e-94 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00237 - - gmx:100783253 829.706