Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00236 ATGAATCAAGTTGTGTTTAACTTCATTTTCTTCACACTAAGCATTCTACTTTTATCAAAAACCAAGGCACAACAGAATTACTCAGGAAATTCAATACTCAGCTGCAAGAACAACGATACTACGGGACCTTCACCGGCATTTCTTTACACCTGCAATGGCCTCAACAGATCCTGCAAGAGCTTTCTCACCTTCAAATCCACTCCTCCTTATAACTCTGTTACCACAATTTCCAACCTCACATCATCGAACCCGAACGAGCTAGCCAGAATCAACCGCGCTAGTTTGGTTACAGTTTTCCCACCTGGTAAAGAGGTTATTGTTCCTGTCAACTGTTCTTGTTTAACCAAGGATTATTACCAAGCTGAAACCAAATATATATTGGGTCTACACCCAACATATTTCATAGTAGCAAATGACACGTTCCAGGGTTTGTCGACATGTGATTCTCTTATGCGTGCGAATCCATACGGGGAACTTGATTTGCATATAGGAATAGAGTTACACGTGCCACTCCGATGCGCTTGTCCAACGTATCATCAGAAAACAAATGGCACCAAGTATTTACTCACATATTCTGTGACCTGGGGTGATAACATTTCAAATATTGCCACAAGATTCAATGTAACAGTGGGTAATCTACTTGATGCCAATGGTTTTTCGGAACAAACTGAACTCCTTTATCCATTCACAACTGTTCTGATTCCTTTGGAAAGTGAACCAGTGAGTTTAACAACCGTAGTTGCTAATGATCCTCCTCCACCACCACCACCACCAACCTCTCTTGGTTGCAGCTTCAAAAAGTGCAAATCAAACAGGAAAGTAGTCCCCATTGCTTTAACCACATCAGTGCTGGTTCTGTGTGTCTTCTTGTTTGTGCTGTTTATGTTTCTGTTTCTGCTCAGAAAGAGATCGGCAAGGTTCATTAAGCGAGGAACACAATTTAACAATAAAAGAGGGGTGTTTTCTGAAGAGATCCGCGAGGAGATAGCGATCATTGAACATCTCTCCAAAGTGTATAGCTTTGAGGAAATAAAAGAGGCAACTGAGAATTTTAGTCCAAAGAACAGAATCAAAGGTTCTTTATTTCGTGGTGTATTCGACAATGGCAAAGAAGTGTTGGCTGTTAAAAGAATGAGAAGAGATGCTTCCACAGAAATCAGTTTGCTGAAAAGGATCAATCATTTCAACCTGATAAAACTGCAAGGTTACTGTGAAAACAATGATTGCATATATCTTGTTTATGAATACATAGAAAATGTATCTTTAAGAGAATGGCTTAGCAAGAATAGGTCCACTGAACACCAAAGTTGGGAAAAGACGATACAGATTGCTTTGGATATTGCCAATGGTCTTCAGTATCTTCACAACTTCACAGAACCTTGCTATGTACACAAGGACATTAACAGTGGAAATGTTCTATTGAACAAAGATTTAAGGGCCAAGATAGCAAATTTTGCTCGAGCTGAAGAATCAAAAAGGATGATATCTTCTGGTTGTCCCACATCACATGCTGTAGGATCTGTCGGTTATTTGGCTCCCGAGTATCTCAAGGAAGGGGTAGTCAGCACCAAAATGGACATCTACGCCTTTGGGGTTGTGCTGTTGGAATTGATCACTGGCAAAGATTCTATTACCCTACGAGATGGAAGAGAAGTAATGCTTTATGAAATCATACAAAATATCGTTGGCAAAGAGAACGAAGAAGAGAAGGTGAGTTTGTTCATTGATCCTTGCCTCACTGGAAACTGTAGGAAACCATGTGCACTGCAGCTAGTTAAACTGACTCTAGCCTGCTTGATCCAAGAACCAGAAAGCAGACCAAACATTGAAGAGGTAGTCTCTAGCTTACTGAAAATACAGGCAAATGAAATGCAACAAAGAATATCCCCCATCATCAATAAAAGCCTAAGCCTGGAGAGGTGA 1923 0.4041 MNQVVFNFIFFTLSILLLSKTKAQQNYSGNSILSCKNNDTTGPSPAFLYTCNGLNRSCKSFLTFKSTPPYNSVTTISNLTSSNPNELARINRASLVTVFPPGKEVIVPVNCSCLTKDYYQAETKYILGLHPTYFIVANDTFQGLSTCDSLMRANPYGELDLHIGIELHVPLRCACPTYHQKTNGTKYLLTYSVTWGDNISNIATRFNVTVGNLLDANGFSEQTELLYPFTTVLIPLESEPVSLTTVVANDPPPPPPPPTSLGCSFKKCKSNRKVVPIALTTSVLVLCVFLFVLFMFLFLLRKRSARFIKRGTQFNNKRGVFSEEIREEIAIIEHLSKVYSFEEIKEATENFSPKNRIKGSLFRGVFDNGKEVLAVKRMRRDASTEISLLKRINHFNLIKLQGYCENNDCIYLVYEYIENVSLREWLSKNRSTEHQSWEKTIQIALDIANGLQYLHNFTEPCYVHKDINSGNVLLNKDLRAKIANFARAEESKRMISSGCPTSHAVGSVGYLAPEYLKEGVVSTKMDIYAFGVVLLELITGKDSITLRDGREVMLYEIIQNIVGKENEEEKVSLFIDPCLTGNCRKPCALQLVKLTLACLIQEPESRPNIEEVVSSLLKIQANEMQQRISPIINKSLSLER 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00236 640 ProSiteProfiles LysM domain profile. 189 234 IPR018392 -
Trre1g00236 640 Gene3D Phosphorylase Kinase; domain 1 312 416 - -
Trre1g00236 640 Pfam LysM domain 191 235 IPR018392 -
Trre1g00236 640 SUPERFAMILY Protein kinase-like (PK-like) 341 628 IPR011009 -
Trre1g00236 640 Gene3D Transferase(Phosphotransferase) domain 1 417 635 - -
Trre1g00236 640 SUPERFAMILY LysM domain 189 235 IPR036779 -
Trre1g00236 640 FunFam PTI1-like tyrosine-protein kinase 3 417 629 - -
Trre1g00236 640 Pfam Protein kinase domain 376 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00236 640 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 8 623 - -
Trre1g00236 640 ProSiteProfiles Protein kinase domain profile. 351 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00236 640 Gene3D LysM domain 189 244 IPR036779 -
Trre1g00236 640 SMART LysM_2 190 235 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00236 Trre-Chr1 1733218 1735140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00236 5 621 Receptor kinase-like Gene Family AT2G23770 38.679 9.79e-120 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre1g00236 PK_Tyr_Ser-Thr 7.6e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00236 - - gmx:100806221 844.343