Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00234 ATGCTTCCAGTTCCAGATCTAATTGCATCACAAGAAAGAGATTTTTTGTGGTTGTTTCTCTATGTGTCTTCTGTGATTGTTTTAGAAATGGGTATGGATAATAATCTTGCTCCAATTGATCTATCGTTTCTTCAGATGGCAAGTGGGTTTGGGGAATCAACAAGCAGGTCACCCCCAAGCCCTCCCTACTCAAGCAATAATAATAACAATGATGCTGGCAATTTTGAATGCAACATTTGCTTTGACTTAGCACAAGATCCTATTATTACTTTGTGTGGCCATCTTTTCTGCTGGCCTTGTCTTTACAAATGGCTTCATTTTCATTCACAGTCACGAGAATGCCCGGTTTGTAAGGCGATGATTGAGGAGGAGAAGTTGGTTCCTTTATATGGGAGAGGAAAGACATCAACTGATCCGAGATCAAAATCTATTCCCGGTGTTAATATCCCTCATCGTCCTGCCGGTCAGAGACCTGAAACTGCTCCTCCACCTGAATCAAATCCTTTTTCTCAACATGGATTTGGATTCACAGGATTTGCACCAGCAACAACTGCAAGATTTGGGAATTTCACATTTTCTGCAGGATTTGGCAGTTTTATACCATCCTTATTTAACTTTCAGATGCATGGATTTCATGGTGGAGCCATGTATGGTGGAGCAGCTGGTTTCCCTTATGGATTTTCTAATTCATTTCATGGTGGCCATGTTCATAGATATCCTCCGCACACAGGTCAAGGGCAACAAGATTATTATCTGAAGAGGCTGCTGATGGTTGTTATTTTTTGCGTGGTACTTGCTTTGCTTTGGCAATAG 813 0.4133 MLPVPDLIASQERDFLWLFLYVSSVIVLEMGMDNNLAPIDLSFLQMASGFGESTSRSPPSPPYSSNNNNNDAGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKAMIEEEKLVPLYGRGKTSTDPRSKSIPGVNIPHRPAGQRPETAPPPESNPFSQHGFGFTGFAPATTARFGNFTFSAGFGSFIPSLFNFQMHGFHGGAMYGGAAGFPYGFSNSFHGGHVHRYPPHTGQGQQDYYLKRLLMVVIFCVVLALLWQ 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00234 270 CDD RING-HC_AtRMA-like 75 119 - -
Trre1g00234 270 ProSitePatterns Zinc finger RING-type signature. 92 101 IPR017907 -
Trre1g00234 270 ProSiteProfiles Zinc finger RING-type profile. 77 118 IPR001841 -
Trre1g00234 270 Pfam Zinc finger, C3HC4 type (RING finger) 75 122 - -
Trre1g00234 270 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 59 267 IPR045103 GO:0005783|GO:0006511|GO:0061630
Trre1g00234 270 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 61 131 - -
Trre1g00234 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 131 IPR013083 -
Trre1g00234 270 SMART ring_2 77 117 IPR001841 -
Trre1g00234 270 MobiDBLite consensus disorder prediction 131 167 - -
Trre1g00234 270 SUPERFAMILY RING/U-box 68 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00234 Trre-Chr1 1702693 1707225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00234 75 253 C3H Transcription Factor Family AT1G19310 66.321 1.07e-86 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00234 K10666 - gmx:100527488 382.104