Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00233 ATGGAAGTTTGCACACCTCTCAAATCTGATAGTAGATTAAAGCACCGTCCTTTGACCCCTCTTAGGCTTTTAAGGGGTGTGATATGTTTGGTTGTGTTTCTTTCTACAGCTTTCATTTGTATAGTATATCTTTCACCTCTGGCAGTTGTAGGATTGCGACTGATCAGCATTCGTTATAGTAGGAAGGCAGTATCGTTCTTCTTTGGTCTTTGGCTATCTATGTGGCCCTTTCTATTTGAAAAGATAAACAGAACTAAAGTTGTCTTTTCTGGGGATAGTATTCCGATGAGGGAACGTGTGTTACTTATCGCCAATCACAGAACTGAGGTTGATTGGATGTACTTGTGGGATCTTGCTCTTAGAAAGGGAAGACTAGGATGTATAAAATATATCCTTAAGAGCAGCTTAATGAAACTACCGATTTTCGGATGGGGATTTCACCTTCTGGAATTCATTGCAGTGGAGAGGAAGTGGGAGATAGATGAACAAATATTGCAACAAAATCTTTCAACATTTCAGGATCCGAAAGATCCTTTGTGGCTATCTCTTTTTCCTGAAGGAACCGATTATACTGAGCAGAAGTGTAACAGTAGTAAAAAATTTGCTGCTGAAGCTGGGCTTCCTGTGCTGACAAATGTATTACTTCCAAAAACAAAGGGGTTTCACACTTGCTTGGAAACTCTACGAGACTCATTGGATGCAGTATATGACGTGACAATTGCATACAAGAATCAATGTCCTTCATTTCTGGACAATGTTTTTGGTCTTGATCCTTCAGAAGTACACCTGCATATTCGGCGTATTCCTATAGAGGAGATTCCGATTTCTGAAACTAAAGCTGCTTCTTGGTTAATGGATGCATTCCAAATAAAGGACCAATTGCTTTCTGGTTTCAAGGTTCAAGGCCATTTCCCTAACCAACTAAATGAAGACGAAATCTCAACCTTCAAGTGTCTACTCACTTTTATCGTGATAATTTCTTTTACTGCCTTGTTTACTTATTTTACCTTGTTCTCTCACATCGGGTTCAAGCTGTATGTAGGTCTATCTTGTGCATATCTTTCTTTTGCAACGCGCTTCAAAATTCAATTGACGCCTTTAGCAAATTATGTCCAAGCATTCTATAACAGCAAGAAACAAAAGAATGCATAG 1152 0.3898 MEVCTPLKSDSRLKHRPLTPLRLLRGVICLVVFLSTAFICIVYLSPLAVVGLRLISIRYSRKAVSFFFGLWLSMWPFLFEKINRTKVVFSGDSIPMRERVLLIANHRTEVDWMYLWDLALRKGRLGCIKYILKSSLMKLPIFGWGFHLLEFIAVERKWEIDEQILQQNLSTFQDPKDPLWLSLFPEGTDYTEQKCNSSKKFAAEAGLPVLTNVLLPKTKGFHTCLETLRDSLDAVYDVTIAYKNQCPSFLDNVFGLDPSEVHLHIRRIPIEEIPISETKAASWLMDAFQIKDQLLSGFKVQGHFPNQLNEDEISTFKCLLTFIVIISFTALFTYFTLFSHIGFKLYVGLSCAYLSFATRFKIQLTPLANYVQAFYNSKKQKNA 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00233 383 PANTHER 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED 17 358 - -
Trre1g00233 383 Pfam Acyltransferase 90 243 IPR002123 GO:0016746
Trre1g00233 383 CDD LPLAT_LCLAT1-like 76 266 - -
Trre1g00233 383 SMART plsc_2 100 222 IPR002123 GO:0016746
Trre1g00233 383 Pfam Acyltransferase C-terminus 254 324 IPR032098 -
Trre1g00233 383 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 37 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00233 Trre-Chr1 1688920 1690972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00233 1 366 Miscellaneous Gene Families AT1G75020 65.847 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00233 K13513 - gmx:100808657 655.21