Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00224 ATGGATTCTAATAGAGAAACTTCAGCAATGAAGATTCAGAGGAAGTCGTCGTTGAGGGAGAAAGAGAACAATAGAATAAGAGAAAGAAGAAGGAGAGCCATAACAACAAAGATATTCACTGGACTTCGAACTCAAGGGAACTACAATTTGTCGAAGCATTGTGACAACAACGAGGTCCTCAAAGCTCTATGTGAAGAAGCTGGTTGGTTCGTCAAAGAAGACGGAACCATCCATCGCAAGGGTTACAAGTCTCCAGTAAACAACCATGCAGGCACCTCCACCATAACCAAACCTTTCTCTCTTATTACCAAAATCCAAGTTCTTACTCCTGTAATACCTCCTCCTAACTCACCAACACCAACAAAAACCAAACCAATTCCTACATGGGATTCTATTTCCAAAGAATCTAAGGCTTTTTTCAATTACCCTTTTGTCGCATCTTCTACCGCTGCTAGCCCCATTTCTAATCAGGGGATTAAGTTCCAACCTTTTGCTCAATCTCCATTTGCAGTGCCAAGTTCTTCATCTTTCAATGTTGTGGCTGATAATTCAATCAGAGAGATCGGAAGTTCAAAAATGTTTGGAGTGCAAGCAAAGCTTTGGGTTGGGGAGAAAGTTCATGATGAAGGATTGGATGATTTGGTGAAACTCACCCTTGGAACTGGAAAATCAAGGAGTTAG 681 0.4126 MDSNRETSAMKIQRKSSLREKENNRIRERRRRAITTKIFTGLRTQGNYNLSKHCDNNEVLKALCEEAGWFVKEDGTIHRKGYKSPVNNHAGTSTITKPFSLITKIQVLTPVIPPPNSPTPTKTKPIPTWDSISKESKAFFNYPFVASSTAASPISNQGIKFQPFAQSPFAVPSSSSFNVVADNSIREIGSSKMFGVQAKLWVGEKVHDEGLDDLVKLTLGTGKSRS 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00224 226 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 10 101 IPR033264 GO:0003700|GO:0006351|GO:0009742
Trre1g00224 226 MobiDBLite consensus disorder prediction 1 25 - -
Trre1g00224 226 Pfam BES1/BZR1 plant transcription factor, N-terminal 13 110 IPR008540 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00224 Trre-Chr1 1622470 1623663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00224 13 226 BZR Transcription Factor Family AT1G19350 38.924 3.33e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Trre1g00224 BES1_N 5.6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00224 K14503 - pvy:116112866 176.792
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00224 1 1622470 1623663 Trre1g00224 1 1622470 1623663 ECH
Trre1g00224 1 1622470 1623663 Trre5g05564 5 56028858 56030633 PCT