Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00201 ATGTTTAATCTATGGGGTAGTTCTCAACAAGACCAGAAAACCAAAGAGGCTTATGCTGAATCTAAGATTAACGAGCTCAAGGTAGCAATTGGACCCTTATCAGGACACAGCTCGAAGTACTGCACCGATGCTTGTTTGAAGCGATATCTAGAAGCTCGTAATTGGAATGTCGATAAGTCGAAGAAGATGTTGGAAGACACACTCAAGTGGAGATCAGTCTACAAGCCTGAGAAAATCCGCTGGGAAGAGGTTGCCGAGGAAGGGGAGACGGGGAAAGTTTATAGAGCAGGTTTTCATGACAGACAAGGAAGGACTGTTCTTATTTTGAGACCTGGAATGCAGAACACTTCTTCATTGGACAATCAAATTAAGCATCTTGTGTATCTATTGGAAAATGCTATGCTTAATCTTCCACCAGGTCAAGAACAAATGGCTTGGTTAATAGACTTCACAGGCTGGTCAATTACAAACAATGTTCCCCTCAAATCAGCCAGAGAGACCATCAGTATTCTACAGAATCACTATCCTGAAAGGCTTGGCATAGCATTTCTTTATAACCCTCCTCGAATTTTTGAAGCATTTTGGAAGATAGTGAAGTATTTCTTGGATAACAAGACATTTCAGAAGGTGAAATTTGTGTACCCTAAGAATAAAGATAGTGTGGAGCTGATGAGGTCTTATTTTGATGAGGAAAATCTTCCAAGAGAATTAGGTGGAAAAAGCATATTGAACTATAACCATGAAGAATTTTCCAAAATAATGGTTCAGGATGATTTGAAATGTGCAGACTTTTGGGGTTCTTCTGATGATAAGCTCTCAAACCACAGGCATTGTTCAGCAGAGGTAGCTCCAGCTACATGA 861 0.4019 MFNLWGSSQQDQKTKEAYAESKINELKVAIGPLSGHSSKYCTDACLKRYLEARNWNVDKSKKMLEDTLKWRSVYKPEKIRWEEVAEEGETGKVYRAGFHDRQGRTVLILRPGMQNTSSLDNQIKHLVYLLENAMLNLPPGQEQMAWLIDFTGWSITNNVPLKSARETISILQNHYPERLGIAFLYNPPRIFEAFWKIVKYFLDNKTFQKVKFVYPKNKDSVELMRSYFDEENLPRELGGKSILNYNHEEFSKIMVQDDLKCADFWGSSDDKLSNHRHCSAEVAPAT 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00201 286 FunFam Phosphatidylinositol transfer protein 3 3 274 - -
Trre1g00201 286 Pfam CRAL/TRIO, N-terminal domain 41 66 IPR011074 -
Trre1g00201 286 SUPERFAMILY CRAL/TRIO domain 81 254 IPR036865 -
Trre1g00201 286 SUPERFAMILY CRAL/TRIO N-terminal domain 18 83 IPR036273 -
Trre1g00201 286 CDD SEC14 89 240 IPR001251 -
Trre1g00201 286 Pfam CRAL/TRIO domain 89 239 IPR001251 -
Trre1g00201 286 PANTHER GH16843P 10 270 - -
Trre1g00201 286 SMART sec14_4 87 242 IPR001251 -
Trre1g00201 286 SMART CRAL_TRIO_N_2 42 67 IPR011074 -
Trre1g00201 286 Gene3D - 5 276 IPR036865 -
Trre1g00201 286 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 81 245 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00201 Trre-Chr1 1469628 1472326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00201 46 234 Acyl Lipid Metabolism Gene Families AT1G55840 27.488 2.78e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00201 K26544 - gmx:100800854 485.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00201 1 1469628 1472326 Trre1g00201 1 1469628 1472326 ECH