LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre1g00160	ATGTGCTTACCATTGAGACCCTTGACAAGGTATTTGTATATGAGTAAATTGGTTACACTTCCTGGAACATCAGGTGCACTTTTGCGGCTTGTAATTGATCAGTTGCAGAAGGTAACTCACGAAGGTTGTGTCAACCGGGTACGCTCCATGACACAAAATCCCCACATATGTGCATCTTGGGCAGAATATGATTATGTGCAGGCAGAGAAAATAGGATTGGAATATATGGATGTTGAAGCTTTGAAGAAGCTAAACAAAAATAAGAAACTGGTGAAGAAATTGGCAAAGAAGTACCATGCCTTTTTAGCTTCTGAAGCTGTTATCAAGCAGATTCCTTGTCTTTTGGGTCCTGGTCTCAACAAGGCAGTTGTTTCCCACCAAGAATCTCTTGAGGCTAAGGATAATGAAACTAAGGCAATGGGTAATGAGTTATGGAAAGATGTGGTGTTGGCGAAATATGGTAGTTTGGCGGTGGGTAATCCCGATTTGGAGGTGGTGGAGCCTCGTGTGGGTGCTTCGGTGTGGTGGAGGGATTTGTGTCGCTTGGATAGAGGGGTGGGGTGGTTCTCTACGGCTACCTCTAGAATTGTGGGTAATGGCCGTGGTACTAAGTTGTGGAAGGACGTGTGGGTGGAGGGTCAAAGTCTTGAGCGGAGATTTTCGCGTCTCTTTGGTATTTCAATGCAAAAAGACCATTTGATTAGTGAGGCCGGGAGGTGGATTGAGGGGGTTTGGAGTTGGGAGTTGGTGTGGCGTCGTAACTTTTTTGATTGGGAGGAAGTCATCCTTAATGAGCTTTTGGACGTGTTAGCTCGGTTTATTTTTAAGGATGAGGAGGATACGTGGAGTTGGAATCCGGGTGGTGGCGATGTGGGTGCTTGTGTAGCCCATTTGTAG	897	0.4582	MCLPLRPLTRYLYMSKLVTLPGTSGALLRLVIDQLQKVTHEGCVNRVRSMTQNPHICASWAEYDYVQAEKIGLEYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPCLLGPGLNKAVVSHQESLEAKDNETKAMGNELWKDVVLAKYGSLAVGNPDLEVVEPRVGASVWWRDLCRLDRGVGWFSTATSRIVGNGRGTKLWKDVWVEGQSLERRFSRLFGISMQKDHLISEAGRWIEGVWSWELVWRRNFFDWEEVILNELLDVLARFIFKDEEDTWSWNPGGGDVGACVAHL	298

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre1g00160	298	Gene3D	-	54	140	IPR016095	-
	Trre1g00160	298	PANTHER	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	47	140	-	-
	Trre1g00160	298	SUPERFAMILY	Ribosomal protein L1	52	122	IPR023674	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre1g00160	Trre-Chr1	1230684	1236859	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre1g00160	56	164	Cytoplasmic Ribosomal Protein Gene Family	AT1G08360	64.035	2.95e-21	88.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre1g00160	K02865		-	tpra:123905405	153.68