Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00144 ATGTCTTCACTCATTTCACCACCATCACCTTCATTTCTCACTATTCCTTCACACAAAACTCATTTCTTCGTTTCCACTCATCACTTCCTTCCACTTCAACTTCAACCAAGGAGCATCAAATTCCAACACAAATGGAAAACAATAGAATGCAAAGTTGCAACGAACTTAAATCCTCCACCGTCAACGTCGTTAACGAAAGAACCACACAAGTACTTCGACCAAGTAGTTATAACCGTTCGTGGAGGAGACGGTGGTCACGGAGCAATACTGAATCAAAAACCTAAAAAGGAAGTTGAAAAAGTAAAAGGAAGAAAAGCGATTAATGATAATAATTATAAGAAAAGCGCGTTGAAGAGAGATTTTGATGGTTCTTTGATACTACCAATGGGAGGTCATGGTGGTGATGTTGTTATTTATGCAGATGAAAGTAAAGATACGTTGTTAGAGTTTCATAATAAGAATCGATTTAATGCGAAACGCGGTGGAAATGTTGATGCAGTTGGTGTTTTTACTTCTTATTTGCGGAATGGAATTTCTGCACCTACTGTTCGTATTCCTGTTCCTCTAGGTACAGTTGTGAAAAGCAAACGGGGAAAGATGTTAGCTGATTTAGCTCGACCTGGTGATGAAGTTCTTGTTGCAAGGGGTGGACAAGGAGGGATTAGTTTGTTAGAAATGCCAAAGAATAATAGGAAAAAAATGACGAGTTTGACAACTAATGTGATGAGAGATGACTCCGATAAGGTTTTAGTTCACGGTCAACCTGGAGAGGAGATTAAGTTGGAATTGATCCTAAGAGTCGTAGCTGACGTTGGTTTGATTGGACTTCCAAATGCCGGGAAATCAACACTTCTGGCAGCCATTACACTTGCAAAACCTGATATTGCTGATTATCCTTTTACAACATTAATGCCAAATCTTGGACGCCTTGATGGTGATCCCAACTTAGGAGCAGGGATGTATTCGTCTGAAGCTACATTGGCAGATTTGCCTGGTCTTATAGAAGGTGCTCACTTGGGAAAGGGTCTTGGTCGCAATTTCTTGAGGCATCTAAGGAGAACCCGGCTGTTGGTCCATGTTGTTGATGCATCTACTGAAAACCCTGTAAATGACTACAGAACTGTCAGAGAAGAGTTGCGCATGTATAATCCCGAGTACCTTGAACGACCATACATTGTTGTTTTGAATAAGATTGACCTGCCAGAGGTTATAGATAGGCTTCCAACATTGACAAAAGAAATTCAAAGAATTGGCAGTGATGGTGCAGCTTTTGAACCAAAACCAAGCTCTGAAATTTCTGCTCAATTATTTTCCGATGAAAGTGATACAAAGGAAAAAACACTTGAGGATTATCCACGACCTCACTCTGTCATTGGAGTTAGTGTTTTAAAGCGTATCAAGATTAACGAGATGTTGAAAGAAATAAGGGCCGCTTTAAGGCAATGCGTTGATTCTAATGAGCCATTGGCTTCTAGTGTGCCGCCGTGA 1488 0.4046 MSSLISPPSPSFLTIPSHKTHFFVSTHHFLPLQLQPRSIKFQHKWKTIECKVATNLNPPPSTSLTKEPHKYFDQVVITVRGGDGGHGAILNQKPKKEVEKVKGRKAINDNNYKKSALKRDFDGSLILPMGGHGGDVVIYADESKDTLLEFHNKNRFNAKRGGNVDAVGVFTSYLRNGISAPTVRIPVPLGTVVKSKRGKMLADLARPGDEVLVARGGQGGISLLEMPKNNRKKMTSLTTNVMRDDSDKVLVHGQPGEEIKLELILRVVADVGLIGLPNAGKSTLLAAITLAKPDIADYPFTTLMPNLGRLDGDPNLGAGMYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDASTENPVNDYRTVREELRMYNPEYLERPYIVVLNKIDLPEVIDRLPTLTKEIQRIGSDGAAFEPKPSSEISAQLFSDESDTKEKTLEDYPRPHSVIGVSVLKRIKINEMLKEIRAALRQCVDSNEPLASSVPP 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00144 495 ProSiteProfiles Obg domain profile. 69 268 IPR006169 -
Trre1g00144 495 Gene3D - 268 487 IPR027417 -
Trre1g00144 495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 270 479 IPR027417 -
Trre1g00144 495 Gene3D GTP1/OBG domain 70 267 IPR036726 -
Trre1g00144 495 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 269 480 IPR031167 GO:0005525
Trre1g00144 495 CDD Obg 269 434 IPR031167 GO:0005525
Trre1g00144 495 PRINTS GTP1/OBG GTP-binding protein family signature 327 342 IPR006073 GO:0005525
Trre1g00144 495 PRINTS GTP1/OBG GTP-binding protein family signature 271 291 IPR006073 GO:0005525
Trre1g00144 495 PRINTS GTP1/OBG GTP-binding protein family signature 292 310 IPR006073 GO:0005525
Trre1g00144 495 PRINTS GTP1/OBG GTP-binding protein family signature 344 362 IPR006073 GO:0005525
Trre1g00144 495 SUPERFAMILY Obg GTP-binding protein N-terminal domain 130 234 IPR036726 -
Trre1g00144 495 NCBIfam small GTP-binding protein domain 270 415 IPR005225 GO:0005525
Trre1g00144 495 Pfam 50S ribosome-binding GTPase 270 397 IPR006073 GO:0005525
Trre1g00144 495 Pfam GTP1/OBG 130 266 IPR006169 -
Trre1g00144 495 ProSitePatterns GTP1/OBG family signature. 329 342 IPR006074 GO:0005525
Trre1g00144 495 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 66 477 IPR045086 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00144 Trre-Chr1 1118356 1123621 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00144 - - aprc:113846583 732.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00144 1 1118356 1123621 Trre1g00144 1 1118356 1123621 ECH