Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00143 ATGATGAAATCAGGTATGGGAATTGAAGAGAGAAAACAGCTTAAAAGGCCAGCACAAGCAAGTTCAAGAAAAGGGTGTATGAGAGGTAAAGGTGGACCTGAAAATGCAAGTTGCACCTATAAAGGTGTAAGACAGAGAACATGGGGCAAATGGGTTGCTGAAATTCGTGAACCAAACCGTGGTGCACGTCTTTGGTTAGGTACTTTTGAAACTTCTCATGAAGCTGCTTTAGCTTATGATGCTGCTGCTCGTAAACTTTATGGTCCTGATGCAAAACTCAACCTTCCTGAACTTTCTACACCTTCTGTTCATTCCCCTGCAAATTCATCATCCTCTGGGACAATAACACAAACACCTCATATGCAACAAACTCAAATTCAAATTCAACACAACCCCAACAACAACAACAACAACTTCAACATTTCATCTCACAATTCTTGCAACAACAACAACAATATCAACATAAACATAAACAACAACATTCACAACAACAATAACAACAACAACTCTGTTTTTGTGTCTCTGTCATCACAACAAATTGGTGATATTGCACCAATATATAGCAGTGATTCAATTATGTCACTTCCAATGGAAGAACAAGTTGAACAAAGCTATAATAATTATTCAAATGGTATGATGGAAAGTAATAATAATCATGATTCATTTTTTGGAACATTGAATTATGAAACCATGCCAGTTATAGATGATGATTCAATTTGGACAGAAGCTGCTATGTCTTTAGATTCTGCTATTTCAATGGATTTTCCAATGATAGCTGATGCTGATGGAATTTATAATTCAGGTGGAAATTTTGCTGAAGTTGGTGCTTGGGATTCTCTACAAACTCCATGGTGCATGTAA 861 0.3659 MMKSGMGIEERKQLKRPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEAALAYDAAARKLYGPDAKLNLPELSTPSVHSPANSSSSGTITQTPHMQQTQIQIQHNPNNNNNNFNISSHNSCNNNNNINININNNIHNNNNNNNSVFVSLSSQQIGDIAPIYSSDSIMSLPMEEQVEQSYNNYSNGMMESNNNHDSFFGTLNYETMPVIDDDSIWTEAAMSLDSAISMDFPMIADADGIYNSGGNFAEVGAWDSLQTPWCM 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00143 286 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Trre1g00143 286 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 14 241 - -
Trre1g00143 286 MobiDBLite consensus disorder prediction 1 17 - -
Trre1g00143 286 MobiDBLite consensus disorder prediction 1 38 - -
Trre1g00143 286 FunFam Ethylene-responsive transcription factor 2 38 97 - -
Trre1g00143 286 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Trre1g00143 286 MobiDBLite consensus disorder prediction 99 144 - -
Trre1g00143 286 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Trre1g00143 286 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Trre1g00143 286 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Trre1g00143 286 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
Trre1g00143 286 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Trre1g00143 286 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00143 Trre-Chr1 1113263 1114123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00143 15 119 AP2-EREBP Transcription Factor Family AT1G75490 76.190 2.57e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre1g00143 AP2 7.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00143 - - tpra:123886830 385.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00143 1 1113263 1114123 Trre1g00143 1 1113263 1114123 ECH
Trre1g00143 1 1113263 1114123 Trre5g05635 5 56462152 56462865 PCT