Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00142 ATGGCTGATTTAGGCTCAGCTTCTTCTAAGAGAATGTGGTGTTCAATTCCAGAAAGGTTTCAACTGCATGTGGCCATGTTGGCCTTGCAGTTTGGTTATGCTGGTTTCCATGTTGTCTCAAGAGCTGCCCTTAACATGGGAGTTAGCAAACTTGTTTTTCCTGTTTATAGGAACATCATTGCTCTCCTTCTCCTCCTTCCATTTGCATATTTCTTGGAAAAGAAGGACAGACCACCAATTAATTTGAACTTCCTTTGCCAGTTCTTTTTTCTAGCACTTATTGGGATTACAGCAAACCAAGGTTTCTATTTGCTTGGCTTAGACAACACATCCCCTACCTTTGCATCAGCAATACAAAACTCTGTCCCTGCCATTACATTTCTCATGGCAGTCCTCCTAAGGATAGAGCAAGTGAGATTGAATAGAAAAGATGGAATAGCTAAAGTAGCAGGAACAATATTTTGTGTAATTGGTGCAACAGTGATTACATTATACAAAGGTCCAACAATATATAGTCCAACACCAAGTAATCACTTAACTAGCAACACAACAACAATAACACCTATGATTGATTTTGGGACAATGTCATTGGGTGATGCAAAAGGAAAAAATTGGACACTTGGATGTTTGTATTTGATTGGACATTGTTTGTCTTGGTCTGGTTGGCTTGTGTTTCAAGCACCTGTCCTTAAGAAGTACCCTGCTCGTCTCTCTGTTACTTCTTATACATGTTTCTTTGGTCTCTTGCAATTTCTTCTTATTGCTTTGGTTGCTGAAAGAAATGCTCAAGCTTGGATTTTTCACTCTGGTGGAGAAGCTTTCACCATTTTATACGCGGGAGTTGTGGCATCTGGAATTGCTTTTGCAGTACAGATATGGTGTATTGATAGAGGAGGTCCTGTGTTTGTTGCTGTATATCAACCTGTTCAAACTTTTGTTGTTGCTATAATGGCTTCTCTTGCTTTAGGAGAAGAGTTCTACTTGGGAGGGATTATTGGGGCAGTGTTGATAGTAGCTGGACTATACTTTGTATTGTGGGGTAAAAGTGAAGAGAAGAAATTTGCAAAGGAACAGCTTGCAATTGCATCATCCAATGCTGAACATAGTAGCATCATTAGACCCGCAAGCCATGCTAAAGCATCATCACTCACTCAACCATTCCTCTCTTCATCAACAGAAAATGTTTAA 1188 0.3973 MADLGSASSKRMWCSIPERFQLHVAMLALQFGYAGFHVVSRAALNMGVSKLVFPVYRNIIALLLLLPFAYFLEKKDRPPINLNFLCQFFFLALIGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAVLLRIEQVRLNRKDGIAKVAGTIFCVIGATVITLYKGPTIYSPTPSNHLTSNTTTITPMIDFGTMSLGDAKGKNWTLGCLYLIGHCLSWSGWLVFQAPVLKKYPARLSVTSYTCFFGLLQFLLIALVAERNAQAWIFHSGGEAFTILYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTFVVAIMASLALGEEFYLGGIIGAVLIVAGLYFVLWGKSEEKKFAKEQLAIASSNAEHSSIIRPASHAKASSLTQPFLSSSTENV 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00142 395 Pfam EamA-like transporter family 26 163 IPR000620 GO:0016020
Trre1g00142 395 Pfam EamA-like transporter family 207 345 IPR000620 GO:0016020
Trre1g00142 395 SUPERFAMILY Multidrug resistance efflux transporter EmrE 250 349 - -
Trre1g00142 395 PANTHER WAT1-RELATED PROTEIN 24 358 IPR030184 GO:0016020|GO:0022857
Trre1g00142 395 SUPERFAMILY Multidrug resistance efflux transporter EmrE 56 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00142 Trre-Chr1 1105145 1108021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00142 1 395 Nodulin-like Gene Family AT1G75500 74.185 0.0 595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00142 - - tpra:123886836 723.005