Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00140 ATGGCAGGTTTCTTCTCTCTAAGCAGTGGAAGAGGAAAAGAAGAAGCAAGAGAACAAGAAGAAAATAACAACAACACTGCAAATAACAATAATCAGTTTCTTTTTAGAAACGAAGAGATCTACAACAAAGGCTTTGAGATATGGCCACAACAACAACATCAACAATCTTCTTTTCATCATCAACAACAGCATCAACAAAACATTAACAATTTCTACTCGTTTGGTGTTGGTAGTTCATCTCGAAGAAACGACGATAACACCAACAACTTACATGATGATGTTTCCGTTTCTTTTTCCGATGAATCGACGAGATTTGGATTAACTGTGATAAGGTCTGGTGGTGGTGGTGGTAGCTTAACCGGTGGAGGAATGAACTGTCAAGATTGTGGTAACCAGGCAAAGAAAGATTGTCCTCATCTTAGATGCAGAACTTGTTGTAAGAGTAGAGGGTTTCAGTGTCAAACTCATGTTAAAAGTACTTGGGTTCCTGCTGCTAAACGACGTGAGCGACAACAGCAGCTTACGTCGTTGCAGCAGCAGAACCAACAACATCAGTTTCACTCGTCAAGAAGACACAGAGAGAATCAAAACGATCCTTCTCCGGGAGGAGCTTCTGGTTCTCTTGCTTGTAGTCCAATACCTATCACTACGACAGGGTTGGAGCTGGGAAATTTTCCACCGGAGCTGAATTCTCCGGCGGTGTTCCGGTGTGTGAAAGTGAGTGCAGTGGATGCACAAGACGAGCGTTACGCGTATCAAACGGCTGTGAACATAGGAGGAAGAGTTTTCAAAGGAATTTTGTATGATCAAGGACTTGAAGGTAATTACACTAGTGCAAATGCTGCTGTTGGTGGTGGTGAGGGTTCTTCTGGTGGTGGTAGCGGCGGCGGTGGTGGTGAAGGAAATCTACAAAATCTGATTACAACTACCACAACAAATGTTAGTAATCCTTTTGAGTATTCATCACTCTATCCAGCTCCATTGAATGCTTTCATGGCTGGTACGCAATTCTTCCCACCTCCAAGATCCTAA 1032 0.4302 MAGFFSLSSGRGKEEAREQEENNNNTANNNNQFLFRNEEIYNKGFEIWPQQQHQQSSFHHQQQHQQNINNFYSFGVGSSSRRNDDNTNNLHDDVSVSFSDESTRFGLTVIRSGGGGGSLTGGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLTSLQQQNQQHQFHSSRRHRENQNDPSPGGASGSLACSPIPITTTGLELGNFPPELNSPAVFRCVKVSAVDAQDERYAYQTAVNIGGRVFKGILYDQGLEGNYTSANAAVGGGEGSSGGGSGGGGGEGNLQNLITTTTTNVSNPFEYSSLYPAPLNAFMAGTQFFPPPRS 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00140 343 MobiDBLite consensus disorder prediction 167 210 - -
Trre1g00140 343 Coils Coil 17 37 - -
Trre1g00140 343 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 329 IPR007818 GO:0003700|GO:0006355
Trre1g00140 343 NCBIfam putative zinc finger domain, LRP1 type 125 167 IPR006510 -
Trre1g00140 343 MobiDBLite consensus disorder prediction 1 32 - -
Trre1g00140 343 Pfam Domain of unknown function (DUF702) 123 273 - -
Trre1g00140 343 MobiDBLite consensus disorder prediction 169 185 - -
Trre1g00140 343 NCBIfam LRP1 C-terminal domain 225 272 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00140 Trre-Chr1 1072376 1073869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00140 1 343 C2H2 Transcription Factor Family AT1G75520 45.455 6.20e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Trre1g00140 DUF702 7.6e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00140 - - psat:127097211 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00140 1 1072376 1073869 Trre5g05642 5 56520288 56521167 PCT