Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00138 ATGAAGATCCAATGTGATGTTTGTAGCAAAAACGAAGCTTCATTATTCTGCACCGCCGATGAAGCCGCCCTCTGCACCGACTGCGACCACCGTGTCCACCACGCCAACAAACTAGCTTCCAAACACCACCGCCTCTCTCTTCACAACCCTTCTCCTAAACAACATCCTCTCTGTGATATTTGTCAGGAGAGAAGAGCTTTTGTGTTGTGTAAGCAAGATAGAGCAATTCTATGCAAAGATTGTGATTCATCAATTCATTCTGTAAATGAACTTACTGAGAAACATGATAGGTTTCTTCTCACTGGTGTTAAGCTTTCAACTACAAACTCTTCTTCTTCATCAACTTCATCAATAACACCTTCTTCAGCTGTTTCTATTTCAAAGTCAATTATTGTTCCTTCTTCTTCTACTTCTTCTTTGGTTGATAAATCTACTACTCCTTCACCAAAATCTGTGGAAGATGGAAGTGGTGGTTCTACTATTTCTCAATACTTGATTGAGACTTTACCTGGTTGGCAAGTTGATGACTTTCTTGATTCTTCTTCTGCTCCTTTTGCTTTCTCTAAGGGTGATGAATTATTTGAAGAAAATCTTGATTCATTTTTTCCAAATAATAATTTGGGGATCTGGGTTCCTCAAGCACCACCACCTTCTCTATATTCTTCATCACAAATCATGATGGGGAACATTGAGACAACAAAGAAAGGGAACAACAACAAGAACAACATCAACATCAACAAATCAAGGTTAAGAGATGATGGGAATATTTTCACAGTTCCACAGATTAGTCCTGTTTACAATCCCAAGAGAACAAGATATCTATGGTAG 828 0.3865 MKIQCDVCSKNEASLFCTADEAALCTDCDHRVHHANKLASKHHRLSLHNPSPKQHPLCDICQERRAFVLCKQDRAILCKDCDSSIHSVNELTEKHDRFLLTGVKLSTTNSSSSSTSSITPSSAVSISKSIIVPSSSTSSLVDKSTTPSPKSVEDGSGGSTISQYLIETLPGWQVDDFLDSSSAPFAFSKGDELFEENLDSFFPNNNLGIWVPQAPPPSLYSSSQIMMGNIETTKKGNNNKNNININKSRLRDDGNIFTVPQISPVYNPKRTRYLW 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00138 275 Pfam B-box zinc finger 54 96 IPR000315 GO:0008270
Trre1g00138 275 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Trre1g00138 275 CDD Bbox1_BBX-like 5 47 - -
Trre1g00138 275 CDD Bbox1_BBX-like 57 100 - -
Trre1g00138 275 SMART bboxneu5 4 47 IPR000315 GO:0008270
Trre1g00138 275 SMART bboxneu5 53 100 IPR000315 GO:0008270
Trre1g00138 275 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Trre1g00138 275 Gene3D Classic Zinc Finger 1 95 - -
Trre1g00138 275 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 264 - -
Trre1g00138 275 FunFam B-box zinc finger protein 21 1 98 - -
Trre1g00138 275 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Trre1g00138 275 MobiDBLite consensus disorder prediction 137 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00138 Trre-Chr1 1050892 1052185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00138 1 275 C2C2-CO-like Transcription Factor Family AT1G75540 44.706 6.73e-75 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Trre1g00138 zf-B_box 1.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00138 - - lja:Lj5g3v0165540.1 293.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00138 1 1050892 1052185 Trre5g05902 5 58606476 58607829 PCT