Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00119 ATGGATGACCGTGAAAATGGAAGGCACAAAGCAGATCAATATAAATCTGCTCAGGGACAGTGGTTGATGCAACAACATCAGCATCAGCATCCTTCCATGAAGCAGATTATGGCTATCATGGCTGAACGAGATGCTGCCATTCAAGAAAGAAATCTGGCCCTTTCTGAGAAAAAGGCAGCACTTGCAGAACGTGACATGGCATTCCTGCAGCGAGATACTGCAATTGCGGAACGAAATAATGCACTTATGGAAAGAGATAACGCAATCGCAACCCTTCAGTTTCGAGAAAACGCTTTGGCCAATGGCGGTATGTCATCATGCCCTCCAGGATGTCAAATCTCACGGGGAGTTAAGCATATACATCATTTGCCGCAGCAGCAACAGGTAAACCATTTGCCTACTATGGCTGATTCTTCTTACGGAACACGTGAGTTGCACACAACCAATGCCCTCCCTGAAGCACCCATTCCTTCAGAGGTTGGGAAACCACCAAGGCGAGCCAAACGACCGAAGGAAAGTAAGTCTGTTTCACCCAACAAGAAGACTCCAAAAACTACTAGAAAGGTCAAGAAAGAGGGTGAGGATTTAAACAAGACAATGTTTGCCAACGACGAAGCACTTGAATGGAAGAGTAGTCAAGAAATTATGAATGGAGGTGATGATCTTAACAAGGAGTTAGCGGTCTCAAAGGCTGATTGGAAACCTCAGGACTTGGCATTGAACCAAGTTGCATACGATGATTCAACCATGCCAGCACCAGTGTGCTCTTGTACTGGTGTTCTGAGACAGTGCTACAAATGGGGCAATGGAGGTTGGCAATCTGCTTGTTGTACAACCACTTTATCGGTGTATCCGCTTCCAGCAGTGCCCAACAAAAGACATGCTCGAGTAGGCGGTAGAAAAATGAGTGGAAGTGCTTTCAATAAACTGCTTAGCCGGCTAGCAGCTGAAGGGCATGATCTCTCGCACCCGGTTGACCTTAAAGACCATTGGGCCAAACATGGTACAAATCGATATATCACAATAAAGTAG 1032 0.4593 MDDRENGRHKADQYKSAQGQWLMQQHQHQHPSMKQIMAIMAERDAAIQERNLALSEKKAALAERDMAFLQRDTAIAERNNALMERDNAIATLQFRENALANGGMSSCPPGCQISRGVKHIHHLPQQQQVNHLPTMADSSYGTRELHTTNALPEAPIPSEVGKPPRRAKRPKESKSVSPNKKTPKTTRKVKKEGEDLNKTMFANDEALEWKSSQEIMNGGDDLNKELAVSKADWKPQDLALNQVAYDDSTMPAPVCSCTGVLRQCYKWGNGGWQSACCTTTLSVYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00119 343 SMART GAGA_bind_2 1 343 IPR010409 -
Trre1g00119 343 MobiDBLite consensus disorder prediction 162 178 - -
Trre1g00119 343 MobiDBLite consensus disorder prediction 17 32 - -
Trre1g00119 343 MobiDBLite consensus disorder prediction 1 32 - -
Trre1g00119 343 MobiDBLite consensus disorder prediction 147 193 - -
Trre1g00119 343 PANTHER - 1 343 IPR010409 -
Trre1g00119 343 Pfam GAGA binding protein-like family 1 343 IPR010409 -
Trre1g00119 343 Coils Coil 52 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00119 Trre-Chr1 867813 868972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00119 66 343 BBR or BPC Transcription factor family AT5G42520 61.644 1.05e-117 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Trre1g00119 GAGA_bind 9.8e-107 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00119 - - tpra:123887069 676.396