Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00115 ATGGAAGGTTTTGATCAAAGTGGTAATAATAAAAAGAATATTCATGCATTTAGTTCTTCTTTAGGTGCATCTGCCAAACCCCCAATTAGGTTGAATTCTATGCCTATTAATCAATTTAATCAAATGGGTTTTCCTGAAAATCAGAAAAGTTCTGGTCTTGGTATACCACCTTCATACCCTAATACCAATACTAGTTTATCACCTAAACCTTCATCTCATTATCCCCAATTTATAGGCTCACAATCCCAAACTCATTCTAGGTCTTTGTCTCAGCCTACTTTTTTCAATCTTGATTCATTTTCCTTGCCTCCACTTAGTCCTTCAGTTTACCCTCCTGTAAGTTCCAACCCTTTTTCTGATTCGGGGTCGAAAGATATTTCTATGGAGGAAAACTTTGGTGTCTCTCATGCACCTTCGCCTAACCGCGGTCATGCTGTTCAACATGGTCTCTGTCTTCCGCCTCGTAAAGGGCACAGACGATCTAGCAGTGATTCGCCTTTAGGGATATCGGAATTTGTTAACTCTGTCCCTCAGTCAGTGGGTGATCGTCGGAATTTGGTTTCTGGAGGAGAGAAATCGGGCTATGAAAAGCTGGTTCAGTTGGTGTTGAAGGATAGGGACAGTGTTGATGGGTTTAGGGGAGAGGTTTTTGATGGGAAGAAAGAGGATGATGCAGTTGTGATGGATGATTTGTTTAGTGCTTACATGAATTTCGAAAATATGAGTTTTTCCGGTATGGAAGATAGCAGAACTAGTGGTTCGAAGACTGTTGAGAGCAGTGATAATGAAGCTGAGAGTCATGTAAATGTAAAAGGAATAGGTGCTAAGGGTGCAAGTTCAAGCGGTTCGGAAGAGAGGAGGGAAGCAGTTAAGAGAAGTTCTAATGGAGATATTGCGCCGGGTAGTCGGCATAGGAGAAGTTTCTCATTGGACAGTTCCATTGGAAATTTTCATTTCGAAGATGGATCGCCTAAGCTTCCTCCTTTACAAAGTCGAGCTGGTCAACACTCGCCAAGCAATTCAATGGATGGTTGTAAAACACCAGAAATCAGCATGGAGTTTGGAAATGGTGAATTCAGCTCACAGGAGATCAAGAAAATAATGGAAAATGACAAGCTTGCTGAAATTGCTGCTTCTGATCCCAAGCGCGCAAAGAGGATTTTGGCCAATCGTCTATCAGCTGCTCGCTCAAAGGAGCGGAAGATGCGATACATTTCTGAATTGGAGCACAAGGTCCAAACTCTTCAGACAGAGACTACTACATTGTCTACTCAGTTTACCAAATTACAGATGGATAACTCAGAGCTTAAAAATGAAAATAACGAGTACAAATTGAGGCTTCAATCCATGGAACAGCAGTCCCAACTGAAAGATGCTCTGAATGAAACTTTGGATGCTGAAGTTCGGCGCTTAAGACGCACTGTAGCAGAACTAGGTGGAGAATCCCTCCTGTCGAGTCTCATGGCTCGACAGCTTGCTATTAACCAACAAATGTTCCAGTCACAGCATCAGCAACCAAACCAGCTTAGAAATTTTCAACCACAGAACAGCCAATCTCAGGAAGAAACACAGACGCAGTCTCAGCAGCATATTCAACGCAATCATGAATTCCAATCCAAGCATCAGAATGGCAAAACTACTGCATAG 1647 0.4232 MEGFDQSGNNKKNIHAFSSSLGASAKPPIRLNSMPINQFNQMGFPENQKSSGLGIPPSYPNTNTSLSPKPSSHYPQFIGSQSQTHSRSLSQPTFFNLDSFSLPPLSPSVYPPVSSNPFSDSGSKDISMEENFGVSHAPSPNRGHAVQHGLCLPPRKGHRRSSSDSPLGISEFVNSVPQSVGDRRNLVSGGEKSGYEKLVQLVLKDRDSVDGFRGEVFDGKKEDDAVVMDDLFSAYMNFENMSFSGMEDSRTSGSKTVESSDNEAESHVNVKGIGAKGASSSGSEERREAVKRSSNGDIAPGSRHRRSFSLDSSIGNFHFEDGSPKLPPLQSRAGQHSPSNSMDGCKTPEISMEFGNGEFSSQEIKKIMENDKLAEIAASDPKRAKRILANRLSAARSKERKMRYISELEHKVQTLQTETTTLSTQFTKLQMDNSELKNENNEYKLRLQSMEQQSQLKDALNETLDAEVRRLRRTVAELGGESLLSSLMARQLAINQQMFQSQHQQPNQLRNFQPQNSQSQEETQTQSQQHIQRNHEFQSKHQNGKTTA 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00115 548 MobiDBLite consensus disorder prediction 244 259 - -
Trre1g00115 548 Coils Coil 426 453 - -
Trre1g00115 548 MobiDBLite consensus disorder prediction 1 20 - -
Trre1g00115 548 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 72 534 - -
Trre1g00115 548 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 380 443 IPR004827 GO:0003700|GO:0006355
Trre1g00115 548 MobiDBLite consensus disorder prediction 31 90 - -
Trre1g00115 548 Coils Coil 398 418 - -
Trre1g00115 548 SUPERFAMILY Leucine zipper domain 382 438 IPR046347 GO:0003700|GO:0006355
Trre1g00115 548 Coils Coil 461 481 - -
Trre1g00115 548 Gene3D - 379 442 - -
Trre1g00115 548 MobiDBLite consensus disorder prediction 1 90 - -
Trre1g00115 548 MobiDBLite consensus disorder prediction 499 548 - -
Trre1g00115 548 Pfam bZIP transcription factor 382 440 IPR004827 GO:0003700|GO:0006355
Trre1g00115 548 MobiDBLite consensus disorder prediction 499 533 - -
Trre1g00115 548 MobiDBLite consensus disorder prediction 244 344 - -
Trre1g00115 548 SMART brlzneu 378 442 IPR004827 GO:0003700|GO:0006355
Trre1g00115 548 MobiDBLite consensus disorder prediction 112 128 - -
Trre1g00115 548 MobiDBLite consensus disorder prediction 330 344 - -
Trre1g00115 548 FunFam Transcription factor VIP1 isoform A 380 442 - -
Trre1g00115 548 CDD bZIP_plant_RF2 383 455 IPR044759 GO:0003700|GO:0006355
Trre1g00115 548 MobiDBLite consensus disorder prediction 106 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00115 Trre-Chr1 809962 813164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00115 53 500 bZIP Transcription Factor Family AT4G38900 45.528 1.33e-98 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre1g00115 bZIP_1 5.9e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00115 - - gmx:100810841 615.535