Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00113 ATGGGGTACTTTCTTGTGCTTCTTTCTCTCTTGCCAATCTTTATTCTATTCACCATCCATATACACAAATTAAAGAGTAGTAGAAGAACATCATCAACTCCATCAGGTCCTAAACCACTTCCTATAATTGGAAATCTGCACCAAATTGACCCTTCATCACCACATCACTCCTTATGGCAACTTTCCAAACAATATGGACCTATCATGTATTTACACCTTGGCTATATCCCAACCTTAGTTGTTTCCTCATCAAAAATGGCCAAAGAAGTGTTGCAAACCCATGACATTAAATTTGCAAGTAGACCATCTTTCCTAGGACTAAGAAAATTGTCTTACAATTGCTTAGATTTGGTTTTTGCACCTTATAGCCCCTATTGGAAAGAAATGAAAAAACTTTGTGTTCTTCATCTCTTTAGCTCTCAACGTGTTCATTCTTTTAGACCCATTAGAGAAAATCAAGTGGCTCAATTGATTCAAAAGTTGTCAAAATATGATGGTGATGAAATAGGTGTGAACTTAAGTGAAATATTGATGTCTTTGACAAATACAATTATATGTAAGATAGCTTTTGGGAAAAAATATGTTTTTGATTATGATGAAGAAGTTGAATTGGGAAATGGACAAAGGGGAAGTAGATTGCAAATTTTGCTTAATGAAGCTCAAGCTTTGATGACTGAATTTTACTTTTCAGATCATTTTCCTTTGTTGGGTTGGATTGATAGAGTTAAAGGAACTCTTAGGAGGCTTGATAAAATTTTCAAGGAAATGGATTTGATATACCAAAGAGTCATTGATGATCATATGGATAATTTAGCAAGGCCTAAAAGCAAAGAACAAGAAGTAGTTGATATCATTGATATATTATTGCAGATGATGAATGACCACTCACTTTCTTTTGAGTTTACTCTTGACCACATCAAAGCATTGCTTATGAACATCTTTATAGGAGGAACAGACACAAGTACAGCAACAGTGGTTTGGGCTATGACATCATTGATGAACAATCCTAGAGTGATGAACAAGGTTCAAATGGAAATCAGAAACTTATATGAAGAAAAAGATTTCATAAATGAAGATGATATTGAAAAGCTTCCTTATCTTAAATCAGTGGTCAAAGAGACATTAAGATTATTCCCTCCAACACCATTACTATTGCCAAGAGAAACTATACAAAATTGTAACATAGATGGCTATGAGATTAAACCAAAAACTCTAGTGTATATTAATGCATGGGCCATCGGAAGAGATCCGGAGAATTGGAAAGATCCAGAAGAGTTTTATCCTGAAAGATTCTTTATGAGTTCAATTGATTTTAAAGGGAATAATTTCGAGTTGATTCCATTTGGAAGTGGAAGAAGAATATGTCCAGGAATGAACATGGGAGTGTGTACTATTGAGCTTTCACTTGCTAATCTTGTTCACTCTTTTGAATGGAAATTGCCTAATGGTTTTGATAAGGAACAAGTGTTGGATACACAAGTGAAACCAGGAATCGTTATGCATAAGAAAATTGATCTTTATCTTGTTCCTAAGAAAAGAAAACCATAG 1548 0.3417 MGYFLVLLSLLPIFILFTIHIHKLKSSRRTSSTPSGPKPLPIIGNLHQIDPSSPHHSLWQLSKQYGPIMYLHLGYIPTLVVSSSKMAKEVLQTHDIKFASRPSFLGLRKLSYNCLDLVFAPYSPYWKEMKKLCVLHLFSSQRVHSFRPIRENQVAQLIQKLSKYDGDEIGVNLSEILMSLTNTIICKIAFGKKYVFDYDEEVELGNGQRGSRLQILLNEAQALMTEFYFSDHFPLLGWIDRVKGTLRRLDKIFKEMDLIYQRVIDDHMDNLARPKSKEQEVVDIIDILLQMMNDHSLSFEFTLDHIKALLMNIFIGGTDTSTATVVWAMTSLMNNPRVMNKVQMEIRNLYEEKDFINEDDIEKLPYLKSVVKETLRLFPPTPLLLPRETIQNCNIDGYEIKPKTLVYINAWAIGRDPENWKDPEEFYPERFFMSSIDFKGNNFELIPFGSGRRICPGMNMGVCTIELSLANLVHSFEWKLPNGFDKEQVLDTQVKPGIVMHKKIDLYLVPKKRKP 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00113 515 CDD CYP71-like 64 506 - -
Trre1g00113 515 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 448 457 IPR017972 GO:0005506|GO:0016705
Trre1g00113 515 Gene3D Cytochrome P450 26 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00113 515 PRINTS E-class P450 group I signature 455 478 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00113 515 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00113 515 PRINTS E-class P450 group I signature 180 198 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00113 515 PRINTS E-class P450 group I signature 409 433 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00113 515 PRINTS E-class P450 group I signature 305 322 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00113 515 PRINTS E-class P450 group I signature 325 351 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00113 515 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00113 515 PRINTS E-class P450 group I signature 445 455 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00113 515 PRINTS E-class P450 group I signature 368 386 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00113 515 FunFam Cytochrome P450 83B1 20 509 - -
Trre1g00113 515 PRINTS P450 superfamily signature 446 455 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00113 515 PRINTS P450 superfamily signature 316 333 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00113 515 PRINTS P450 superfamily signature 369 380 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00113 515 SUPERFAMILY Cytochrome P450 34 513 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00113 515 Coils Coil 339 359 - -
Trre1g00113 515 Pfam Cytochrome P450 34 503 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00113 515 PANTHER CYTOCHROME P450 71B11-RELATED 16 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00113 Trre-Chr1 801434 803700 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00113 28 512 Cytochrome P450 AT3G26330 46.926 3.45e-153 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00113 - - gmx:606704 647.121