Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00112 ATGATGAATGATCACTCATTCTCTTTTAATCTCACTATTGACCACATCAAGGCTGTACTTATGAACATCTTTTTAGCAGGAACTGACACAAGTGCAGCAGTAGTAGTTTGGGCTATGACAACATTGATGAACAATCCTAGAGTAATGAACAAGGTCCAAATGGAAATCAGAAACTTATATGAAAACAAAGATTTCATAAATGAAGATGATATTGAAAAACTTCTTTATCTTAAATCAGTGGTCAAAGAGACATTGAGATTATTCCCTCCATCACCATTATTATTGCCAAGAGAAACAATAGAAAATTGTAACATAGATGGTTATGAGATTAAACCAAAAACTCTTGTGCATGTTAATGCATGGGCCATAGGAAGAGATCCTGAGAATTGGGAAGACCCAGAAGAGTTTTATCCCGAAAGATTTTTTATGAGTTCAATTGATTTTAAAGGGAAGAATTTTGAGTTGATTCCATTTGGAAGTGGAAGAAGAATGTGTCCTGCAATGAACTTAGGAGTTGTCACCGTTGAGCTTATACTAGCTAATCTTGTTCACTCTTTTGATTGGAAAATGCCTAATGGTTTTGATAAAGAACAAGTGTTGGATACACAAGTGAAGCCAGGAATCACTATGCATAAGAAAATTGATCTTTACCTTGTTCCTAGGAAAAGAAAACTATAA 678 0.3437 MMNDHSFSFNLTIDHIKAVLMNIFLAGTDTSAAVVVWAMTTLMNNPRVMNKVQMEIRNLYENKDFINEDDIEKLLYLKSVVKETLRLFPPSPLLLPRETIENCNIDGYEIKPKTLVHVNAWAIGRDPENWEDPEEFYPERFFMSSIDFKGKNFELIPFGSGRRMCPAMNLGVVTVELILANLVHSFDWKMPNGFDKEQVLDTQVKPGITMHKKIDLYLVPRKRKL 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00112 225 Gene3D Cytochrome P450 1 222 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00112 225 PRINTS P450 superfamily signature 26 43 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00112 225 PRINTS P450 superfamily signature 156 165 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00112 225 PRINTS P450 superfamily signature 79 90 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00112 225 Pfam Cytochrome P450 10 213 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00112 225 PRINTS E-class P450 group I signature 15 32 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00112 225 PRINTS E-class P450 group I signature 119 143 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00112 225 PRINTS E-class P450 group I signature 165 188 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00112 225 PRINTS E-class P450 group I signature 155 165 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00112 225 PRINTS E-class P450 group I signature 35 61 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00112 225 PRINTS E-class P450 group I signature 78 96 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g00112 225 Coils Coil 49 69 - -
Trre1g00112 225 FunFam Predicted protein 24 218 - -
Trre1g00112 225 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 158 167 IPR017972 GO:0005506|GO:0016705
Trre1g00112 225 PANTHER CYTOCHROME P450 71B11-RELATED 4 221 - -
Trre1g00112 225 SUPERFAMILY Cytochrome P450 8 223 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00112 Trre-Chr1 798035 799064 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00112 11 222 Cytochrome P450 AT3G26330 58.962 1.41e-83 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00112 - - aip:107646223 350.903