Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00110 ATGGTGAAATCAAATCCATGTTTAAGGTTAATTACTTGCGGTGGTGGTAACAAACAAGATCACCAAGTTGTTTCAGAGGTCAAGGATTCTAATGATAAACGTGGTTGGAGTTTCCGGAAGAGATCTGCAAGACATCGTGTGCTTAGCAATACTGTGGTAACAACAGAGACCACGTCTTCGGCAAATAAGGAGATTCCGGAATATACAAGTACTAATTTTCAATCTCCAGCTGAACCTAATGTCGTTGAAAAGATTTGTACGACAGATTTCTCTGATGAGAAGCCTGAGTTATCCTCCAATACATACTCAGAGATATCAGAAAAAATTGTCACTGAAGCTGAGGGTAAAGTGGACGTCAATCCACCAGAATCTGCGGTGATAATCGTCCAGACTGCCATTAGAGCATATTTGGCTCAAAGAGCACTTCTGAAGAGTAAGAATGTAGTGAAGTTGCAAGCTGCTGTTCGAGGTCACTTGGTCAGAAGGCATGCTGTAGGAACGTTGCGATGTGTTCAAGCTATTGTTAAAATGCAGCTCCTTGTACGAGCACGACATGCTCAGAAGTCACAATTGGATGGCAAAAATGATTACTCAAAAACTTCGGATAACGAGAAGCACACTTCTGTGGAAAAGCTTCTCAGCAATAAGTTTGCTCGTCAGCTTCTGGAATCAACACCAAAAGACAAACCTATCCATGTCAAATGTAATCCTTCTAAAGGCGATTCTGCTTGGAAATGGTTGGAGAGATGGATGCCGGTTCCAGCAAAAGATTCTGCTGAGAATAAAAAGCCAATCAGTGTGTCAGAACAATCAGATGAAACCAAAGATAGCACTCATGTATCTCAATTGGAAACAGATACTCCATCTCATGTTATTCTTCAGTTAGCTGATTCACCTCTACCATCCGAGGATGAAGAGAAGACTTCTACTTATGATGATACCAACTCATACTTTCAAGCAAGCCCCTCTACATCTTCTCTTATAAAGGATAACTTGGAAGAGGCTCCTCCCGAAAAGACGGTTTCAATTGGTGCTAAAGTATCCTCCAATGAAAGTGAGTATTTTCAAAAGGAGATTTTGGATTCAAATGCAAGTGTTCCACAGGAACCTAGTTCTCATCAAAATCCAGAAACTGACGGTGAACAGATCAATCATCCACATGGTGCTAAAATAGGCTCCAATACAATTGATTCTGTTGAAAAGGAATTGTTCGGTTCAAATGCAAGTGTTGCACGGGAGCCTAGTTCGCCTCAGAATCCAGAAAGTGACAGTGAACCGTTCAAACAACCAATAAAAGCATTTGCCTCAGACCAACTAGAGACTGAGGGAAAGAAAGTTGCAGGTGTATCAAGGAAGTTAAGCAATCCAGCATTTATTGCTGCTCAATCAAAATTTGAAGAGCTGAGTTCAAATGTGAATTCGGGTAGGCCAAGTTCTTTGTTCGATCAGGATGTATCAGTTGAATCACAAGCAGATACTGCATATATATCAAAAGAGTTCATCTCATCTGAGAATTCTACTCCCTATCCTTCTAGAATTGGTGATCCTGAAACTGTACTCTCTATTTCTTCAACTCTTGATTCACCTGACAGATCAGAGACTTTGGAAAGCGAGCATGATGCTAAAGATTTAGCAGAAGGGATAGTTAATCCTGAAAACAGTATTAATTATGGTGTGGAAGCCAATACTCCAACTTCTAACCTACCTATCTCTGATTCTGACCGATTAGAAACTGTTAACGACTCCAGTGGAAATATTGTTGATTCAGTGATTCCCGAGAACTTCAAAGAGCCTGCTGTTGAGCCTGATGTAAATGCGTCTGACCTGTTGAGAGAAAAAACTGAGACTGTTCTACCAGATTCCAAGTTGGCAGCTTCACCAGGAAGCTATATGACAATACCTGAGTCTCAAGGAACACCTTCAAGTCAGGTTTCGGTGAAACCTAATAAAATAAACAAGACTGGATCAAGCGGTAAACGTAGGGCACTGTCTATGGGTAACAAATCTCCTGCAAATTCAAATAACGATTCAGGCTCAAGAGTGGCTGTCGGTAACAAGTCTCCTGCGAATGTGAATCACGATTCAGGCTCAAGAGGCAGTAGAGAACAATTGCCTAAGGATCAGCTGAACCGAAAGAGACGCAATTCAATTGGCTCAATAAAACCTGATCAAACTGATCAAGAACCTGCTAGAGATAATAGTAGTAGCAATAGTTCTCTTCCCCGTTTCATGCAAGCTACACAATCTGCTAGGGCCAAGATCAATGCAAATTCCTCCCCAAGATCAAGTCCAGATGTACATGACCCTGAGGTGAACATTAAGAAGAGACATTCCTTGCCCGGTGCAACTGGTAAGCAGGGTTCTCCACGTGTCGAACAATCAATATCTCCAGCTCAGCAAGGCACAAAGGGAAATGGTTCAACCGAGAGAAAATGGCAGAGGTGA 2445 0.4168 MVKSNPCLRLITCGGGNKQDHQVVSEVKDSNDKRGWSFRKRSARHRVLSNTVVTTETTSSANKEIPEYTSTNFQSPAEPNVVEKICTTDFSDEKPELSSNTYSEISEKIVTEAEGKVDVNPPESAVIIVQTAIRAYLAQRALLKSKNVVKLQAAVRGHLVRRHAVGTLRCVQAIVKMQLLVRARHAQKSQLDGKNDYSKTSDNEKHTSVEKLLSNKFARQLLESTPKDKPIHVKCNPSKGDSAWKWLERWMPVPAKDSAENKKPISVSEQSDETKDSTHVSQLETDTPSHVILQLADSPLPSEDEEKTSTYDDTNSYFQASPSTSSLIKDNLEEAPPEKTVSIGAKVSSNESEYFQKEILDSNASVPQEPSSHQNPETDGEQINHPHGAKIGSNTIDSVEKELFGSNASVAREPSSPQNPESDSEPFKQPIKAFASDQLETEGKKVAGVSRKLSNPAFIAAQSKFEELSSNVNSGRPSSLFDQDVSVESQADTAYISKEFISSENSTPYPSRIGDPETVLSISSTLDSPDRSETLESEHDAKDLAEGIVNPENSINYGVEANTPTSNLPISDSDRLETVNDSSGNIVDSVIPENFKEPAVEPDVNASDLLREKTETVLPDSKLAASPGSYMTIPESQGTPSSQVSVKPNKINKTGSSGKRRALSMGNKSPANSNNDSGSRVAVGNKSPANVNHDSGSRGSREQLPKDQLNRKRRNSIGSIKPDQTDQEPARDNSSSNSSLPRFMQATQSARAKINANSSPRSSPDVHDPEVNIKKRHSLPGATGKQGSPRVEQSISPAQQGTKGNGSTERKWQR 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00110 814 MobiDBLite consensus disorder prediction 729 765 - -
Trre1g00110 814 SMART iq_5 144 165 IPR000048 GO:0005515
Trre1g00110 814 SMART iq_5 121 143 IPR000048 GO:0005515
Trre1g00110 814 MobiDBLite consensus disorder prediction 699 719 - -
Trre1g00110 814 Pfam IQ calmodulin-binding motif 146 163 IPR000048 GO:0005515
Trre1g00110 814 Pfam IQ calmodulin-binding motif 124 141 IPR000048 GO:0005515
Trre1g00110 814 MobiDBLite consensus disorder prediction 502 530 - -
Trre1g00110 814 Gene3D - 120 173 - -
Trre1g00110 814 MobiDBLite consensus disorder prediction 357 381 - -
Trre1g00110 814 MobiDBLite consensus disorder prediction 787 814 - -
Trre1g00110 814 MobiDBLite consensus disorder prediction 255 322 - -
Trre1g00110 814 MobiDBLite consensus disorder prediction 409 425 - -
Trre1g00110 814 MobiDBLite consensus disorder prediction 630 698 - -
Trre1g00110 814 MobiDBLite consensus disorder prediction 555 589 - -
Trre1g00110 814 PANTHER IQ-DOMAIN 5-RELATED 30 376 - -
Trre1g00110 814 MobiDBLite consensus disorder prediction 188 210 - -
Trre1g00110 814 MobiDBLite consensus disorder prediction 262 280 - -
Trre1g00110 814 Pfam Protein of unknown function (DUF4005) 724 787 IPR025064 -
Trre1g00110 814 MobiDBLite consensus disorder prediction 357 434 - -
Trre1g00110 814 MobiDBLite consensus disorder prediction 502 814 - -
Trre1g00110 814 MobiDBLite consensus disorder prediction 531 546 - -
Trre1g00110 814 ProSiteProfiles IQ motif profile. 144 173 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00110 Trre-Chr1 779111 783147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00110 419 814 IQD Protein Family AT1G19870 33.097 8.39e-37 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00110 - - cam:101492650 1030.01