Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00109 ATGGATGACAAGATAGACACTGCAGAAAAGAAGGTGTTGGTTGATATTGTAAAGTTGTCACAAAGGAAAGGCATGAAGGGTCAAATGGGAGACTGGAAAGAATTCTTGAACAGTCATGATAAAAAATTTGGGGCAGGTATGAGTGATCCATCAAAGAGGTCCCATGAGGTTTTGGCTGCATTTCTAAAGACATTCACAAAGGATGATGATTTGAAGTTTTTTGGTAATATAATGCGGCATCATTCAAATCAATACACGTTAGAGAGGCTGAAAGATAGATCTCATGATTCCCCCGAGCAGAGTCTAGTCCAAGTAACTCTCCAGCATCCTAGGTATCCACGGGATTATTCACTGCCATCCATTGATGAGGGATGGTTGGTGATAAATCTTAAAAAGAAAGGCAAGGGGATAAGATCTACTGCAATGGTTGCTGTTGATTGTGAAATGGTTCGCTGTGAAGATGGGACTGAAGCTTTAGTCAAAGTCTGTGTTGTAGATCAAAATCTAGAGGTCAAGTTGCACAAACTTGTTAAACCGGATAAAGCAATCGTAGACTATAAAACAGACATTACTGGTGTCTCTTCTGAAGATCTAAAGACAGTGACTTGTTCCTTAGCTGATATACAGAAATCAATGAAGAAGTTGTTATCCAATGGAACCATATTAGTGGGACACAGTTTACATAATGATCTACGTGTGCTGAAGCTAGATTACGTTAGAGTGATCGACACTGCATACATCTTCCAACCCTTGGATGGATCAATTCACATGAGACCTTCTTTGAATAGTTTATGTCAGTCTGTGTTGGGCTATGAAGTTCGGAAAAAGGGTGCTTCACATGATTGTCTAGATGATGCATGTGCAACAATGAAACTAGTTCTTGCAAAGATCAAACATGGTGTTGATAAGCCATTTCCATTGGCAGTGGTTCAAGAGCCTGTTTCAGAAAGTGAGATGGCGAAGCTGTTTATTCACAGAATTCCAACCACTATGAACGTTGAAGCACTACATGAAATTGTTCCAGGAGACTTCACAATAGAGCGCAAGCCTTCCAGGAATGATCAAGGAGATAAATATTCTGCCTTTGTGATCTTTAAGAACCTACGAGAGGCACATGATGCATATGAAAGTCTCCAAGGCAGCCAATCAAAGGATTCAAATGGGCGTCTACAGAAAAATGTCACTTGTCGGCTGAGTACGGGCATGAGTGTCAGTGTATTTGTTCGGGAAATGGGAATTGATGATCACCACAAAAAAATGCCATCTAAGAGAGATTTACCAGTGGACGAGACAGATGATGTTCCCAAGAATAAGAAAGTAAAAATGGATCCAGAAGTTGAGAAGGGTGCCTACTTGAAAGAGATAGAAGCATTGAACCAACGATTGAAAGAAAGTGTGTCGGAAATCGATTCATTGAAGGAACAGTTGAAAAAAGTGGATCCTGAAATTGTAAAGGATGTCCACTTGAAAGAGATTGAAGCATTGAATCAACGATTGAAAGAGAGTGAATTGGAGATTGAATCATTGAGGGAACAGACAAGAAAAAAGGACTTTGAAATCAACGCTCTGCATAAAATGGTATCAACCTTGCAAAAAAGGATAAAACCTAATAAATAG 1617 0.3958 MDDKIDTAEKKVLVDIVKLSQRKGMKGQMGDWKEFLNSHDKKFGAGMSDPSKRSHEVLAAFLKTFTKDDDLKFFGNIMRHHSNQYTLERLKDRSHDSPEQSLVQVTLQHPRYPRDYSLPSIDEGWLVINLKKKGKGIRSTAMVAVDCEMVRCEDGTEALVKVCVVDQNLEVKLHKLVKPDKAIVDYKTDITGVSSEDLKTVTCSLADIQKSMKKLLSNGTILVGHSLHNDLRVLKLDYVRVIDTAYIFQPLDGSIHMRPSLNSLCQSVLGYEVRKKGASHDCLDDACATMKLVLAKIKHGVDKPFPLAVVQEPVSESEMAKLFIHRIPTTMNVEALHEIVPGDFTIERKPSRNDQGDKYSAFVIFKNLREAHDAYESLQGSQSKDSNGRLQKNVTCRLSTGMSVSVFVREMGIDDHHKKMPSKRDLPVDETDDVPKNKKVKMDPEVEKGAYLKEIEALNQRLKESVSEIDSLKEQLKKVDPEIVKDVHLKEIEALNQRLKESELEIESLREQTRKKDFEINALHKMVSTLQKRIKPNK 538
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00109 538 Coils Coil 452 475 - -
Trre1g00109 538 SMART exoiiiendus 141 302 IPR013520 -
Trre1g00109 538 MobiDBLite consensus disorder prediction 417 436 - -
Trre1g00109 538 Pfam Exonuclease 143 292 IPR013520 -
Trre1g00109 538 CDD REX1_like 143 294 IPR034922 -
Trre1g00109 538 SUPERFAMILY Ribonuclease H-like 142 298 IPR012337 -
Trre1g00109 538 FunFam Small RNA degrading nuclease 3 137 311 - -
Trre1g00109 538 CDD RRM_SF 322 382 - -
Trre1g00109 538 Gene3D - 137 305 IPR036397 GO:0003676
Trre1g00109 538 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 11 309 IPR047021 GO:0004527
Trre1g00109 538 SUPERFAMILY RNA-binding domain, RBD 317 385 IPR035979 GO:0003676
Trre1g00109 538 Coils Coil 485 512 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre1g00109 Trre-Chr1 770781 777114 Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00109 138 309 C2H2 Transcription Factor Family AT3G27970 32.984 9.12e-17 80.1
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00109 K14570 - gmx:100785565 688.337