Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00102 ATGTCTGCCAAATGTAGTAAAATTCGCCACATTGTACGCCTCCGCCAGATGCTACGACGCTGGAGAAACAAAGCTCGCATGTCTTCAGCTAATCGTGCACCGTCTGATGTACCATCTGGACACGTGGCAGTATGTGTTGGTGCTAACTACACCAGATTTGTAGTGCGCACTACGTACCTGAACCACCCCATTTTCCAGAAGCTTCTTGTTCAAGCCGAAGAAGAGTATGGTTTCTCTAACCATGGACCGCTTACCATCCCTTGTGATGAAGATTTCTTTGAAGAAGCTCTCCGGTTCATTTCCCGGTCTGGTTCAAACAATGGACCCAACCGGTTCGTTAATCTCGAGGTTGAAGATATTCACAAACGCTGCCACGTGGGAATTAGAACTAACGTGGATTTCTGGCCTGAATCTCGACCGCTCCTACATGGTCTAAGTGAAAAAACCATTTGGTAG 456 0.4715 MSAKCSKIRHIVRLRQMLRRWRNKARMSSANRAPSDVPSGHVAVCVGANYTRFVVRTTYLNHPIFQKLLVQAEEEYGFSNHGPLTIPCDEDFFEEALRFISRSGSNNGPNRFVNLEVEDIHKRCHVGIRTNVDFWPESRPLLHGLSEKTIW 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00102 151 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 26 97 IPR003676 GO:0009733
Trre1g00102 151 Pfam Auxin responsive protein 13 99 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00102 Trre-Chr1 739349 739804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00102 3 150 Calmodulin-binding Proteins AT4G34750 50.658 1.16e-46 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00102 K14488 - cave:132190292 242.662