Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00101 ATGAGTTCCTTAGAAGAAAAGGTTAAAAGTGTTGGAGGAGTTGGAGGTGGACTTGTTGCTGAGATGAAATTGCTTAAAGAAATGCAGGAACATTGTGGGGTAAGAAAGACTTTAAATTCAGAGTTATGGCATGCTTGTGCTGGTCCTCTTGTGTCTTTGCCTCAAGTGGGGGGTCTTGTTTATTACTTCCCTCAAGGACATAGTGAACAGGTTGCAGCTTCTACTAGAAGAACAGCAACATCACAGATTCCTAACTACCCTAATCTTCCATCTCAGTTGTTGTGTCAAGTTCAAAATGTCACACTACATGCTGACAAGGAGACAGATGAAATCTATGCTCAAATGTCTCTCCAACCATTGAATTCTGAAAAAGAAGTGTTTCCTATATCTGAGTTTGGACTAAACAAAAGTAAACATCCAACTGAGTTTTTCTGCAAAACTTTGACTGCTAGTGATACTAGCACACATGGTGGTTTTTCAGTACCACGCAGAGCTGCGGAGAAGCTGTTTCCTCCATTGGATTACACAATTCAACCCCCGACCCAAGAACTTGTTGTTCGAGATTTGCATGATAATACATGGACATTTCGACATATATACCGAGGTCAGCCGAAGAGACACCTTCTTACAACGGGGTGGAGTTTGTTTGTAGGCTCAAAAAGGCTTCGAGCAGGTGATTCTGTTCTTTTTATCAGGGATGAGAAATCGCAATTGCGAGTTGGTGTCAGGCGTGCTAATCGTCAACAGACAACACTACCATCATCAGTACTTTCTGCTGATAGCATGCACATTGGTGTGCTTGCTGCTGCAGCTCATGCTGCTGCTAATCGAAGTCCATTCACAATTTTCTACAATCCAAGGGCATGTCCATCAGATTTTGTTATTCCACTGGCCAAATACAGAAAATCTGTTTATGGAACTCAACTCTCGGTTGGCATGAGATTTGGTATGATGTTTGAGACCGAGGAATCGGGTAAGCGCAGATATATGGGCACAATTGTTGGTATCAGTGATGTCGATCCGTTAAGGTGGCCTGGTTCAAAGTGGCGAAATATTCAGACCGAATGGGATGAGCCAGGGTGTGGTGATAAGCAAAATCGAGTTAGTGTATGGGAGATTGAAACTCCTGAGAGCCTTTTTATCTTTCCTCCTTTGACTTCGAGTCTAAAACGACCATTTCAATCCGGATTTTCGGAAAACGAGTGGGGGACTTTGTTAAGAAGGCCTTTTATTAAAGCACCTGAAAATGGAACAATGGATCTCTCAAACTCAATGCAAAATCTCTACCAAGAAAACATAATGAAGATGCTTTATAAACCACAAGTTATCAACAACAATGGAACCTTTTTACCTGTCTTGCAACAAGAATATGTTCCTACACGACTTTCCTTGCAAGATATGAAGTCATCGCCGACAATAGAGAATCCAAATGTTCATCTTTCAAGTACAGAAAGCATAATGCCTAATTCCTTAAACATGCATTCATTGTTAAAAAGTGATCAACCTGAAAAATTGCACCCTTTGGCCAAAACTGATAAGCTCAAATTAGAATCTGAGGTGTTACCTGATAATATGTTTGATTTTCCTCCTTTCGAAGGCAACAACATTGAGGCCCTAAACCAATTAACATATCATAATCAAAACCAAAATCCATCACTCACTCAAACTAGTCCATGGCCTATGCAGCAGCAGCAGCCTCAGTTAGAATCATCGCTGTTGCATCCTCAACTGATTGATACGGTCCAACCCGATTCTTCTATTACAAACGGCATGCTTCCTCAGCTAGACGTTGATGAATGGATGACGTATTCTTCTTGCCAACAAGTGGTGAACCCCTCTATACCTTCAATGAACCAAGAAGTGTGGGATAATTATGTCAAGAATTTTAACTTGAGGGATCTTTCGGATGAAAGCAATAACCAAAGTGAAATTTGTGCCAGTGTTGATGTTAGTAATAGTGTGAATAACACCACTATGGCTGATCCTTCTACTTCACACACCATTTTCGATGACTTTTGCACAATGAAGGAGAAAATTTTTCAGCAACCTCAAGATTGCATGGTCGGCAATATAAGTTCTAGTCAGGATGGCCAGTCTCAGATAACCACCGCAAGTCTAGCAGAGTCACACGCCTTTCCTCTACGAGACAACTCGGGTGGTACATCTTCAAGCCATGTTGATTTTGATGAAAGTAGCTTTCTGAATAATAACTCATGGAAGCAAGTAACTGCACCGATCCGAACCTACACAAAGGTTCAAAAAGCTGGTTCTGTAGGAAGATCAATTGATGTAACTACTTTCAAGAACTATGAAGAGTTGGTCCGCGCTATTGAATGCATGTTTGGACTGGACGGTCTGCTCAATGACACGAAAGGTTCCGGATGGAAATTAGTATATGTAGATTATGAGAGCGATGTTCTACTTGTTGGAGACGATCCTTGGGAGGAATTTGTGGGGTGTGTTCGCTGTATAAGAATATTATCACCTTCAGAAGTTAAAGAGATGAGTGAAGAAGGGATGAAGCTTCTCAACAGTGGAGCATTGCAAGGAATCAATGTTTGA 2562 0.4122 MSSLEEKVKSVGGVGGGLVAEMKLLKEMQEHCGVRKTLNSELWHACAGPLVSLPQVGGLVYYFPQGHSEQVAASTRRTATSQIPNYPNLPSQLLCQVQNVTLHADKETDEIYAQMSLQPLNSEKEVFPISEFGLNKSKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLRVGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSDFVIPLAKYRKSVYGTQLSVGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPGSKWRNIQTEWDEPGCGDKQNRVSVWEIETPESLFIFPPLTSSLKRPFQSGFSENEWGTLLRRPFIKAPENGTMDLSNSMQNLYQENIMKMLYKPQVINNNGTFLPVLQQEYVPTRLSLQDMKSSPTIENPNVHLSSTESIMPNSLNMHSLLKSDQPEKLHPLAKTDKLKLESEVLPDNMFDFPPFEGNNIEALNQLTYHNQNQNPSLTQTSPWPMQQQQPQLESSLLHPQLIDTVQPDSSITNGMLPQLDVDEWMTYSSCQQVVNPSIPSMNQEVWDNYVKNFNLRDLSDESNNQSEICASVDVSNSVNNTTMADPSTSHTIFDDFCTMKEKIFQQPQDCMVGNISSSQDGQSQITTASLAESHAFPLRDNSGGTSSSHVDFDESSFLNNNSWKQVTAPIRTYTKVQKAGSVGRSIDVTTFKNYEELVRAIECMFGLDGLLNDTKGSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPSEVKEMSEEGMKLLNSGALQGINV 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00101 853 ProSiteProfiles B3 DNA-binding domain profile. 144 246 IPR003340 GO:0003677
Trre1g00101 853 FunFam Auxin response factor 308 380 - -
Trre1g00101 853 Pfam B3 DNA binding domain 144 245 IPR003340 GO:0003677
Trre1g00101 853 Pfam AUX/IAA family 744 834 IPR033389 -
Trre1g00101 853 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 35 837 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre1g00101 853 SUPERFAMILY CAD & PB1 domains 747 826 - -
Trre1g00101 853 FunFam Auxin response factor 142 246 - -
Trre1g00101 853 Gene3D - 141 245 IPR015300 -
Trre1g00101 853 CDD B3_DNA 143 244 IPR003340 GO:0003677
Trre1g00101 853 ProSiteProfiles PB1 domain profile. 747 831 IPR000270 GO:0005515
Trre1g00101 853 Pfam Auxin response factor 270 353 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre1g00101 853 SMART B3_2 144 246 IPR003340 GO:0003677
Trre1g00101 853 SUPERFAMILY DNA-binding pseudobarrel domain 134 273 IPR015300 -
Trre1g00101 853 Gene3D - 308 380 - -
Trre1g00101 853 FunFam Auxin response factor 742 836 - -
Trre1g00101 853 Gene3D - 743 836 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00101 Trre-Chr1 695043 699117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00101 18 852 B3 DNA Binding Superfamily AT1G19850 58.937 0.0 938
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre1g00101 AUX_IAA 3.4e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00101 K14486 - gmx:100813003 1383.24