Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00092 ATGGGAGTTCCGGCGTTCTACAGATGGCTTGCGGAGAAATATCCCATGGTGATTGTTGACGCTGTTGAAGAAGAACCGGTTGTTATCGAAGGTGTTCAAATCCCTATCGATTTGAGTAAACCAAACCCTAACAATCTTGAATATGATAACCTTTATCTTGATATGAATGGTATCATTCATCCTTGTTTTCATCCTGAGGATAGGCCATCACCAACATCTTTCGAGGAGGTGTTTGAGTGTATGTTTGATTACATTGATAGGTTGTTTAACATGGTGCGACCTAGGAAGCTGCTGTTTATGGCTATTGACGGTGTTGCGCCGAGGGCTAAAATGAACCAACAACGGTCTAGGCGGTTTAGGGCAGCTAAAGATGCATCTGATGCGGCTGCTGAAGAATCAAGGTTACGGGAAGAATTTGAAAGTGAGGGCAGAAAGCTTCCTCCTAAAGAAGAGTCACAGACTTTTGATTCAAATGTAATCACGCCTGGAACTGAATTCATGGCTGTTTTATCAATTGCACTTCAGTACTATGTTCATCTTAGGCTGAACAATGACCCTGGTTGGAAAAATATCAAGGTTATTCTTTCTGATGCAAATGTTCCTGGTGAAGGAGAGCATAAGATTATGTCGTATATCCGCCTTCAGAGAAATCTTGAAGGATATGATCCGAATACACGACATTGCCTGTATGGTTTGGATGCTGATTTGATTATGCTGGGTCTGGCTACCCATGAAATCCATTTTTCAATTCTTAGAGAGGTAGTGTTTACTCCTGGTCAAGACAAATGTTTCCTGTGTGGTCAAATGGGTCACATGGCTGCAGAATGTGAAGGAAAGGCTAAAAGGAAGACAGGAGAATTTGATGAAAAGGGAGATGCTATTGTTGTTAAAAAGCCTTTCCAGTTTCTGAACATTTGGACTCTGAGGGAATATCTGGAGTTTGAGATGAGAATACCTAATGTTCCTTTTGAGATTGATTTTGAATGCATATTGGATGATTTTATCTTCATATGCTTTTTTGTTGGAAATGATTTCTTACCACATATGCCTACGCTAGAGATTCGTGAGGGTGCAATTAACTTGCTGATGGCAGTATACAAGAAGGAATTTAAGGAGCTGGGTGGTTATTTGACAAATGGTAGCAAGCCAAATTTGAGCAGGGTGGAGCATTTTATTCAGGCTGTTGGATCATACGAAGATAGCATATTCCAGAAAAGAGCTCGACAGCAACAGCGAACCGTGGAAAGAATTAAGCGTCAGAAGTCACAAGCAAGAAGAGGAGATGATGTTGGGCCTCAAGTTCAACCTGAGTCTCTAGTTCCAGTTTCACAATTCCGCGGTTCTCGTCTTGCTTCAGCTCCGACGGCTTCACCATTTCAACAATCTGGGTCCACCTCAGTTAAAAAAGGCAATAAAGAAGTCCATGAGAGGCCCAGTAAAGTTTCTAGGTTATCTTCAGGAGCAACTGTTGCTGCTGCAATTGTTGAAGCTGAGAATAGTCTTGAAATAGATGCTCAAGATAACAAAGACGACTTGAAAATAAAGCTGAAGGGGATACTTCGTGACAAATCTGATGTGTTCAACTCAAAAGGTGGTCACGAGGACAAGATTAAGTTGGGAGAACCAGGCTGGAAAGAGAGGTATTATGAAGAAAAGTTTTCTGCTCAAACTCCTGAAGAACTTGATGCTATACGGAAAGATGTTGTCTTGAAATACACTGAGGGTCTATGCTGGGTGATGCATTATTATTATGAAGGCGTTTGTTCTTGGCAATGGTTTTATCCTTACCATTATGCCCCCTTTGCGTCTGATCTCAAGGACCTTGGTGATCTCAATATTAAGTTTGAGTTGGGTACTCCATTCAAACCGTTTGATCAGCTTCTTGGAGTTTTTCCTGCTGCAAGCTCTCATGCTCTGCCTGAGCCTTATCGGAAATTAATGACTGACCCCAACTCACCAATTATCGACTTTTATCCATTAGACTTTGAAGTGGACATGAATGGCAAACGCTATGCTTGGCAGGGTATTGCAAAGTTGCCTTTTATTGATGAAACCCGTCTCCTTCAGGAAGTGCAGAAAGTAGAAGACTTGTTAACGCCAGAGGAAAAACGACGAAATGCAATAATGTTCGAGATGCTTTTTGTAAATTCATGTCATCCTCTCTCTGCGTGCATTAGTACACTTGACAACAAATGTAGAAACATGTCCAACTCTGAACGTGCTGATGTCAAGGAAAAAATTGATCCCAATGAAAGGGATACATGCAGTGGTGGAATGAATGGTTACATATCCTTATGTGGTGGAGAACCTTGCCCCCCCATCTTCAGGTCCCCTATTGCCGGCATGGAAGATATTATGGATAATCATGTCATATGCGCAATATATAGACTTCCAGATGTACATGAACATATAACCCGACCGCCACATGGAGTTAAATATCCAAAGAAGATTGTTACTCTTGGAGATCTAAAACCTGAACCTGCTCTTTGGCATGAAGATAATGGTAGGAGATTTAATGAAAGTGGAAGGAGAAACCCGCCAGGAGCTATATCTGGTCGGGAGCTTGGAGATGCAGCACACAGACTCGTTGCCAATTCCTTACAGATCAGGACGGACTCAAATAGATACCAGCATCCTAATGGATCAACAATGCCTTATAATGGACCAAGGGGTCATAGACAATCACACCATGGCCATAACTACGGACCACACCCTGGCCAAAATTATGGATCACGCCCCGGCTCTAACTATGAATCACGCCCTGGCTACGCCGCAATGCCACCGCCTTTATCGGCTCCTCCACAGTATGTACCTTATGCTGCTGCCCCTCCTGGGCCGTATGGTTACCAACCATACTCTCCACCAGTGGTGCATAGTCCTCATCAACACCAATCAAATTCTTTTCCAAGAGGTGACCATCAAATCCCTAGATCACAACATTATGAAAGAAATAACCATCATGTTAACGGTGGAAATCCAAGGCATTCCTCAGGAAACAATCAGAATCCTCATTTTTCAAATACACAAGGTTCATTTCCCCGTCAAAGTCAACACGATGCTGGTCGCCGCAGCCAAAACTTCCAACCATTTAGAGGTTCTACCCAGTGGACTTCTCCAGGTAACCCTAGTAGGGAATACGGTCAACATTCGGCCAATCATTATTCTCTATTAGATAGAGGAGCAAGCCGGAAGCCGAGGCCTCCACCCAATCATAATCGCAAATAA 3225 0.4282 MGVPAFYRWLAEKYPMVIVDAVEEEPVVIEGVQIPIDLSKPNPNNLEYDNLYLDMNGIIHPCFHPEDRPSPTSFEEVFECMFDYIDRLFNMVRPRKLLFMAIDGVAPRAKMNQQRSRRFRAAKDASDAAAEESRLREEFESEGRKLPPKEESQTFDSNVITPGTEFMAVLSIALQYYVHLRLNNDPGWKNIKVILSDANVPGEGEHKIMSYIRLQRNLEGYDPNTRHCLYGLDADLIMLGLATHEIHFSILREVVFTPGQDKCFLCGQMGHMAAECEGKAKRKTGEFDEKGDAIVVKKPFQFLNIWTLREYLEFEMRIPNVPFEIDFECILDDFIFICFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFKELGGYLTNGSKPNLSRVEHFIQAVGSYEDSIFQKRARQQQRTVERIKRQKSQARRGDDVGPQVQPESLVPVSQFRGSRLASAPTASPFQQSGSTSVKKGNKEVHERPSKVSRLSSGATVAAAIVEAENSLEIDAQDNKDDLKIKLKGILRDKSDVFNSKGGHEDKIKLGEPGWKERYYEEKFSAQTPEELDAIRKDVVLKYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGDLNIKFELGTPFKPFDQLLGVFPAASSHALPEPYRKLMTDPNSPIIDFYPLDFEVDMNGKRYAWQGIAKLPFIDETRLLQEVQKVEDLLTPEEKRRNAIMFEMLFVNSCHPLSACISTLDNKCRNMSNSERADVKEKIDPNERDTCSGGMNGYISLCGGEPCPPIFRSPIAGMEDIMDNHVICAIYRLPDVHEHITRPPHGVKYPKKIVTLGDLKPEPALWHEDNGRRFNESGRRNPPGAISGRELGDAAHRLVANSLQIRTDSNRYQHPNGSTMPYNGPRGHRQSHHGHNYGPHPGQNYGSRPGSNYESRPGYAAMPPPLSAPPQYVPYAAAPPGPYGYQPYSPPVVHSPHQHQSNSFPRGDHQIPRSQHYERNNHHVNGGNPRHSSGNNQNPHFSNTQGSFPRQSQHDAGRRSQNFQPFRGSTQWTSPGNPSREYGQHSANHYSLLDRGASRKPRPPPNHNRK 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00092 1074 MobiDBLite consensus disorder prediction 113 156 - -
Trre1g00092 1074 Coils Coil 407 427 - -
Trre1g00092 1074 MobiDBLite consensus disorder prediction 413 438 - -
Trre1g00092 1074 Pfam Xrn1 helical domain 325 823 IPR041412 -
Trre1g00092 1074 Gene3D - 606 708 - -
Trre1g00092 1074 SUPERFAMILY Retrovirus zinc finger-like domains 258 283 IPR036875 GO:0003676|GO:0008270
Trre1g00092 1074 MobiDBLite consensus disorder prediction 117 151 - -
Trre1g00092 1074 Gene3D - 148 387 - -
Trre1g00092 1074 Gene3D - 1 133 - -
Trre1g00092 1074 Pfam XRN 5'-3' exonuclease N-terminus 1 253 IPR004859 GO:0003676|GO:0004527
Trre1g00092 1074 SMART c2hcfinal6 262 278 IPR001878 GO:0003676|GO:0008270
Trre1g00092 1074 Coils Coil 122 142 - -
Trre1g00092 1074 MobiDBLite consensus disorder prediction 869 926 - -
Trre1g00092 1074 MobiDBLite consensus disorder prediction 975 989 - -
Trre1g00092 1074 MobiDBLite consensus disorder prediction 990 1050 - -
Trre1g00092 1074 MobiDBLite consensus disorder prediction 950 1074 - -
Trre1g00092 1074 FunFam 5'-3' exoribonuclease 1 136 - -
Trre1g00092 1074 PIRSF Exonuclease_Xrn2 1 1028 IPR017151 GO:0004534|GO:0005634|GO:0006139
Trre1g00092 1074 PIRSF Exonuclease_Xrn2 948 1054 IPR017151 GO:0004534|GO:0005634|GO:0006139
Trre1g00092 1074 MobiDBLite consensus disorder prediction 450 468 - -
Trre1g00092 1074 MobiDBLite consensus disorder prediction 450 483 - -
Trre1g00092 1074 CDD PIN_XRN1-2-like 51 312 - -
Trre1g00092 1074 MobiDBLite consensus disorder prediction 957 973 - -
Trre1g00092 1074 FunFam 5'-3' exoribonuclease 149 372 - -
Trre1g00092 1074 MobiDBLite consensus disorder prediction 831 853 - -
Trre1g00092 1074 FunFam 5'-3' exoribonuclease 608 708 - -
Trre1g00092 1074 PANTHER 5'->3' EXORIBONUCLEASE 1 1026 IPR027073 -
Trre1g00092 1074 MobiDBLite consensus disorder prediction 869 889 - -
Trre1g00092 1074 ProSiteProfiles Zinc finger CCHC-type profile. 262 276 IPR001878 GO:0003676|GO:0008270
Trre1g00092 1074 Pfam Zinc knuckle 262 276 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00092 Trre-Chr1 617899 626475 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00092 K12619 - gmx:100785683 1650.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00092 1 617899 626475 Trre1g00092 1 617899 626475 ECH