Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00088 ATGGACATGGACCTCGACGACCAAACTTCCGACCACAACAAAGATGGAAAACCCATTTTGGTAATCTTAGTGGGTGCACCTGGAAGCGGGAAATCAACATTCTGTGAAGAGGTTATGCGTTCCTCTTCTCGTCCTTGGCTTCGCGTTTGTCAGGACACTATTGGAAATGGTAAAGCAGGAAGTAAAGCTCAATGCCTAAGTAGTGCAGCTAGAGCATTGAAGGATGGGAAGAGTGTATTCATTGACAGATGCAATCTTAACAGAGAACAAAGATCAGATTTTATAAAGCTTTGGGGTGAAACCCAAATAGATACGCATGCAGTTGTACTTGATCTTCCTGCTAAGCTTTGTATTTCTCGATCTGTTAAACGATCTGGGCATGAAGGAAATTTGCAGGGTGGAAAAGCTGCTGCAGTTGTGAATAGAATGCTTCAAAATAAAGAGCTCCCCAAATTAAGTGAAGGCTTTAACCGAATAACATTTTGTCAGAGTGAGAGTAATGTCAAAGATGCTATTGATACATACCAAAAACTCGGGCCACTAGAGAACCTTTCACATGGTTGCTTTGGTCAGAAAAATCCAGATTCGAAAATCCAATCTAGTATAATGAAATTCCTGAAAAAGGCAGAGGTTCCAGTTGATACCGTATCTAAAGAAAATGTCATCGGAGGCTCTACTTCCCAGACTCCTGGGAAAAATGATTCCCTCTGCAAAGATACGGAAAAAATTCCATCAGCGCATGATAATTCCAAGTTAGGGTCAAAGGAAACAAAAGGCCAAGCTGACAAATCTGCGGGTTCCTGTCGCAATATTTCTTTAGATGATCCCCCAACTCTTGCGTTTCCATCTATTTCAACAGCTGATTTCCAATTCAACCATGATAAGGCAGCCGATATTATTGTTGAGAAGGTCGCAGAGTACTCAAATAAGATAGGGAATGCCAGGCTTGTACTAGTTGACTTGACACACAAGTCAAAGATTTTGTCCTTAGTTAAATCCAAAGTGGCAGAAAAGAACATTGATACCCAAAAGTTCTTTACCCATGTTGGAGACATCACTCGCCTTCATTCCACAGGTGGTTTGCGCTGTAATGTCATAGCTAATGCTGCCAATTGGCGGCTAAAACCTGGTGGTGGAGGTGTTAATGCATCAATTTTTGATGCCGCAGGTCCGGAACTGGAGTCTGCAACCAAAGAAAAAGCAAAGACTCTTTCACCTGGGAATGCTGTTGTTGTCCCTCTACCTTCATCTTCTCCATTGTTCACAAGAGAAGGTGTGACCCATGTAATACATGTCCTTGGACCTAACATGAATCCACAAAGACCAAATTGTCTGAACAATGATTATGAAAAAGGCTGCAAAGTTCTCCAAGATGCTTATGCATCACTATTTGAAGGTTTTGCATCAATCGTTGGGAACCAGGTACAGCATAATGAAAACCTTGGGAAAAAGACTTTGGAGTTGCAGGATCAGTCTGAAAAGTGTTCCATAAATCATTCTACTAATTCCGATCAAAAGAGTAAGAGAGATGCTGATCATGGATCGGAAAAAAGCAAGAAATACAAGGGAGCTCACGATGGTTTTGAATTGGCCTTTACGGGTTCTAAGGATGAAAAGGTAGATTCCGAGCATAGAAGAACCGATGGGAGCACGAGGAAGGCTTGGGGGTCATGGGCTCAAGCTCTTCACCAAATAGCTATGCATCCTGAAAAGCATAAGGATGACTTGCTTGAAATTTCAGAAGACATTGTTGTATTGAATGATATGTATCCTAAGGCACAGAAGCATGTTCTGGTGTTGGCACGCAGTAGAGGTCTTGATTGCCTGTCAGATGTCCAAGAGGAGCACCTTTCGGTATTGAAAAGGATGCATGCAGTGGGTTTAAAATGGGCTGAGAAATTCTTGAGCGAGAATGCTTCACTAGTATTTCGCCTTGGATATCACTCGGCTCCGTCAATGCGACAACTACATTTACATGTTATTAGCCAGGACTTCGAATCAAAGCATTTGAAAAATAAGAAGCATTGGAACTCGTTTAACACTGCCTTCTTTCGTGACTCGGTAGATATAATTGAGGAGGTATCTAATCATGGAAAAGCAACATTGAAAGATGATGACAAACTACTGTCTATGGAGTTGAGGTGCCACAGATGTAAAAGTGCACATCCAAACATACCGCGCCTAAAATCACATATTAGTAGCTGCCAAGCACCCTTTCCTGCTTACCTACTCGAAAACGGCCGTTTGGTCAGTGCATGCACCAGGTAA 2268 0.4211 MDMDLDDQTSDHNKDGKPILVILVGAPGSGKSTFCEEVMRSSSRPWLRVCQDTIGNGKAGSKAQCLSSAARALKDGKSVFIDRCNLNREQRSDFIKLWGETQIDTHAVVLDLPAKLCISRSVKRSGHEGNLQGGKAAAVVNRMLQNKELPKLSEGFNRITFCQSESNVKDAIDTYQKLGPLENLSHGCFGQKNPDSKIQSSIMKFLKKAEVPVDTVSKENVIGGSTSQTPGKNDSLCKDTEKIPSAHDNSKLGSKETKGQADKSAGSCRNISLDDPPTLAFPSISTADFQFNHDKAADIIVEKVAEYSNKIGNARLVLVDLTHKSKILSLVKSKVAEKNIDTQKFFTHVGDITRLHSTGGLRCNVIANAANWRLKPGGGGVNASIFDAAGPELESATKEKAKTLSPGNAVVVPLPSSSPLFTREGVTHVIHVLGPNMNPQRPNCLNNDYEKGCKVLQDAYASLFEGFASIVGNQVQHNENLGKKTLELQDQSEKCSINHSTNSDQKSKRDADHGSEKSKKYKGAHDGFELAFTGSKDEKVDSEHRRTDGSTRKAWGSWAQALHQIAMHPEKHKDDLLEISEDIVVLNDMYPKAQKHVLVLARSRGLDCLSDVQEEHLSVLKRMHAVGLKWAEKFLSENASLVFRLGYHSAPSMRQLHLHVISQDFESKHLKNKKHWNSFNTAFFRDSVDIIEEVSNHGKATLKDDDKLLSMELRCHRCKSAHPNIPRLKSHISSCQAPFPAYLLENGRLVSACTR 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00088 755 ProSitePatterns HIT domain signature. 644 662 IPR019808 -
Trre1g00088 755 Gene3D - 2 177 IPR027417 -
Trre1g00088 755 Pfam Scavenger mRNA decapping enzyme C-term binding 564 675 - -
Trre1g00088 755 MobiDBLite consensus disorder prediction 503 522 - -
Trre1g00088 755 Pfam C2HE / C2H2 / C2HC zinc-binding finger 680 733 IPR032566 -
Trre1g00088 755 PANTHER APRATAXIN-RELATED 279 735 - -
Trre1g00088 755 FunFam Transcription factor bHLH140 7 177 - -
Trre1g00088 755 SMART YBR022w_8 344 484 IPR002589 -
Trre1g00088 755 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 164 IPR027417 -
Trre1g00088 755 MobiDBLite consensus disorder prediction 492 522 - -
Trre1g00088 755 MobiDBLite consensus disorder prediction 235 258 - -
Trre1g00088 755 SUPERFAMILY HIT-like 552 719 IPR036265 -
Trre1g00088 755 MobiDBLite consensus disorder prediction 220 234 - -
Trre1g00088 755 Gene3D Leucine Aminopeptidase, subunit E, domain 1 320 471 IPR043472 -
Trre1g00088 755 ProSiteProfiles Macro domain profile. 332 598 IPR002589 -
Trre1g00088 755 Gene3D - 557 738 IPR036265 -
Trre1g00088 755 Pfam AAA domain 20 148 - -
Trre1g00088 755 Pfam Macro domain 367 446 IPR002589 -
Trre1g00088 755 FunFam aprataxin isoform X2 556 736 - -
Trre1g00088 755 FunFam Transcription factor bHLH140 325 472 - -
Trre1g00088 755 MobiDBLite consensus disorder prediction 220 269 - -
Trre1g00088 755 SUPERFAMILY Macro domain-like 325 465 IPR043472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00088 Trre-Chr1 606895 611497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00088 16 751 C2H2 Transcription Factor Family AT5G01310 58.424 0.0 858
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00088 K10863 - gmx:100786762 1174.07