Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00086 ATGACAATATCTTGTTCACTTTCTCTCCCTAAATTTCATTCATCCTTTCTTTCTTCCCCTCTTAAATCATTATCTATCACCCCATTAGCTAGAAATACAATTCAACAAAAACCCACATTTTATCCACGTATTAGAGCTATTGAACTTGATCAAAACACGATAGTGGCTATAACTGTTGGTGTTTTGAGTGTGGCTGTTGGAATTGGCATTCCAGTGTTCTATGAAACACAAATTGATAATGCGAATAAGAGAGATAACAGGCAGCCCTGCTTCCCGTGCAATGGATCTGGAGCTCAGAAATGCAGATTTTGTTTGGGAACTGGTAATGTGACAGTTGAACTTGGTGGGGCTGAGACGGAGGTCTCTCGCTGCATTAATTGTGAAGGTGCTGGTTCACTGACATGCACAACTTGTCAAGGGTCTGGTATTCAACCTCGTTACCTTGATCGTAGAGAATTCAAAGATGATGACTGA 474 0.4072 MTISCSLSLPKFHSSFLSSPLKSLSITPLARNTIQQKPTFYPRIRAIELDQNTIVAITVGVLSVAVGIGIPVFYETQIDNANKRDNRQPCFPCNGSGAQKCRFCLGTGNVTVELGGAETEVSRCINCEGAGSLTCTTCQGSGIQPRYLDRREFKDDD 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00086 157 Pfam Family of unknown function (DUF5351) 101 132 IPR035272 -
Trre1g00086 157 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 85 144 IPR036410 -
Trre1g00086 157 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE PROTEIN 33 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00086 Trre-Chr1 596282 598545 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00086 K22520 - gmx:100305711 251.906
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00086 1 596282 598545 Trre1g00086 1 596282 598545 ECH