Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00083 ATGCTTACAAGAAGAAAAATTCTCTCATTATTTTCATCTTCTCAACTAATTTCTCACAAATTGAATTCAAATGCACTTCCACATCCAATTCACAACCATTTCCCCCAAATTTCAAACAATTTTAGGGTTTTCCTATTCAATCTCTATGGAACTCAAGATTCCAAATTTCCTGAATACCAGATGCCTACTGTTACATGGGGAGTGATTCAAGGTCGAAAAGAGAAACTTGTTTCGCGTGTCATTATTTTCGATTACCTCAAGGGTTTGGGAATTATTCCTGATGAATTGCAGGATTTGGAGCTTCCTTCAACCGTTGATGTAATGAGGGAACGTGTTGAGTTTCTTCAGAAATTAGGTTTGACCATCGATGATATTAATCAGTATCCTTTGATGTTGGGTTGTAGTGTGAGAAAAAATATGATTCCTGTTTTAGGTTATTTAGAAAAAATTGGGATTTCAAGGTCTAAACTTGGTGAATTTGTTAAGAATTATCCACAAGTTTTGCATGCTAGTGTTATTGTTGAGCTTGCTCCTGTTATTAAGTTTCTTAGAGGGCTTGATGTGGAGAAAGATGATATTGGGTTTGTGTTGCAAAAATATCCTGAACTTTTAGGGTTTAAGCTTGAAGGTACTATGAGTACTTCAGTAGCTTATCTTGTTAGTATTGGTGTTTGTCCTAGAGATATTGGTCCAATGGTTACACAGTATCCTTATTTTTTAGGTATGAGAGTTGGTACTATGATAAAGCCTCTCGTTGATTACTTGGTCAATTTGGGGTTGCCTAAGAAGATTTTAGCTAGGATGTTGGAGAAAAGAGCTTATATACTTGGCTATGATCTTGAAGAGACCGTGAAACCAAATGTTGATTGTTTGATTAGTTTTGGTTTGAGGAAGGAGTGTTTGCCGTCGGTTATAGCTCAGTATCCACAGATTATCGGGCTGCCTCTTAAGGCTAAATTGTCTTCGCAACAGTATTTTTTCAGTTTGAAGCTTAAGATTGATCCAGAAGGGTTTGCGAGGGTGGTGGAGAAGATGCCACAGGTGGTTAGTCTTCACCAAAATGTGATTATGAAACCAGTTGAGTTTTTACTTGGTAGGACAATACCGTCGCAGGATGTGGCTAGTATGGTGATCAAGTGCCCTCAGTTGGTTGCATTGCGAGTTGAACTCATGAAGAACAGTTATTTCTTCTTCAAAAGTGAGATGGAGAGACCTATAAAAGAGCTTGTGGAGTTCCCTGAATACTTTACTTATAGTTTGGAATCAAGGATTAAACCTAGATACCAGAGGCTCAAGAGCAAGGGAATAAAATGTTCGTTGAATTGGATGCTGAATTGTAGTGACCAGAGATTTGAAGAGAGATTGCAGGGCCATTATATCGAAACCGAAAGTATAGGTCCTTCATTCTGTATTGGTGGGAAATTAGAGTTACCTGGGAATGACATAGTATCAGATGATGAAGAGGAGAGTGATGATGAAATGCTATACAGAAGAACTGGAGCCAGAGACCAACAACTTCAAGCTGTTGCTGAAAGTTCAGCCGCATCTGTTGTGAGGGCCATTTTGGTACATGAATTTCAGTTGCTTAACATATGGATTCATCATCCGGCTTGCAGTAGCAGTGGTTTCCGAACAACTAAATTACTTGACAGTTGA 1656 0.3841 MLTRRKILSLFSSSQLISHKLNSNALPHPIHNHFPQISNNFRVFLFNLYGTQDSKFPEYQMPTVTWGVIQGRKEKLVSRVIIFDYLKGLGIIPDELQDLELPSTVDVMRERVEFLQKLGLTIDDINQYPLMLGCSVRKNMIPVLGYLEKIGISRSKLGEFVKNYPQVLHASVIVELAPVIKFLRGLDVEKDDIGFVLQKYPELLGFKLEGTMSTSVAYLVSIGVCPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLVNLGLPKKILARMLEKRAYILGYDLEETVKPNVDCLISFGLRKECLPSVIAQYPQIIGLPLKAKLSSQQYFFSLKLKIDPEGFARVVEKMPQVVSLHQNVIMKPVEFLLGRTIPSQDVASMVIKCPQLVALRVELMKNSYFFFKSEMERPIKELVEFPEYFTYSLESRIKPRYQRLKSKGIKCSLNWMLNCSDQRFEERLQGHYIETESIGPSFCIGGKLELPGNDIVSDDEEESDDEMLYRRTGARDQQLQAVAESSAASVVRAILVHEFQLLNIWIHHPACSSSGFRTTKLLDS 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00083 551 SMART mt_12 122 153 IPR003690 GO:0003690|GO:0006355
Trre1g00083 551 SMART mt_12 374 405 IPR003690 GO:0003690|GO:0006355
Trre1g00083 551 SMART mt_12 339 369 IPR003690 GO:0003690|GO:0006355
Trre1g00083 551 SMART mt_12 158 189 IPR003690 GO:0003690|GO:0006355
Trre1g00083 551 SMART mt_12 266 297 IPR003690 GO:0003690|GO:0006355
Trre1g00083 551 SMART mt_12 302 334 IPR003690 GO:0003690|GO:0006355
Trre1g00083 551 SMART mt_12 194 225 IPR003690 GO:0003690|GO:0006355
Trre1g00083 551 SMART mt_12 406 437 IPR003690 GO:0003690|GO:0006355
Trre1g00083 551 SMART mt_12 230 261 IPR003690 GO:0003690|GO:0006355
Trre1g00083 551 FunFam Transcription termination factor mterf4, chloroplastic 108 245 - -
Trre1g00083 551 Pfam mTERF 144 452 IPR003690 GO:0003690|GO:0006355
Trre1g00083 551 PANTHER CGI-12 PROTEIN-RELATED 143 275 IPR003690 GO:0003690|GO:0006355
Trre1g00083 551 FunFam Transcription termination factor MTERF4, chloroplastic 246 460 - -
Trre1g00083 551 Gene3D Transcription termination factor 3, mitochondrial 248 462 IPR038538 -
Trre1g00083 551 Gene3D Transcription termination factor 3, mitochondrial 108 247 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00083 Trre-Chr1 576131 578711 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre1g00083 mTERF 3e-107 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00083 K15032 - gmx:100809590 830.476