Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00078 ATGGCTCGCATCACTAATCCCTTGCCTGAACAATCCCACCCCAAAAAACAACTTCCAAAACACAACCATAAGAAACAACAACAGAATCATAAACAAAAGCAGGAACAAAAACAAAAGCAAAAACCAAAAGAGAAGCCACCATCTTCATGGGATCAAATAAAAAACATCCTAACTTGCAAACAGATCGAAGGTTCAAAAGTTCATGATCCTTCAAAACCAAATAACAACAATGGATACTCAAAATTGAGTTCATCTTGTAGCTCAATTTGTAGCTTCAGAGATGTTGTTCATGGAAACACTAGAGTTGTTCATAGGTCTGATAATTCATCACCAGAAAGTAGCATCTTGGGTCAAGAAACAAGTTTGCTCAAAAGAAAACCAGTCACTGCTTCATCATCATCAACAACTCGCTCTGCATCATGTTCTGGTAAATCATCCAACGGTGGTAGAAACTACACTTCATCATCTTCTTCTTCAAGAGGAATGCAGTTTAGGAAGCTCTCTGGATGTTATGAATGTCACATGATCGTTGACCCTAGCAGGCTACCAATTCCTAGGAGCACAGTGTGTGCTTGTGATCAATGTGGAGAGGTCTTCCCTAAGATTGAAAGTTTGGAGCTTCATCAAGCTGTTCGTCATGCTGTTTCGGAGCTGGGTCCAGAGGATTCGGGTCGGAACATAGTGGAGATCATCTTCAAGTCAAGTTGGTTAAAAAGAGAATCTCCAATGTGTAAGATCGAACGGATATTAAAAGTCCACAACACCCAACGCACAATCCAACGGTTCGAAGAATGCAGAGACTCCGTAAAGTCCCGTGCGTCCAACCCCACCAAGAAAAACCCCCGCTGTGCCGCAGACGGCAATGAACTCCTCCGTTTTCACAGCACAACCTTATCCTGCGCACTCGGCGCACGTGGTTCCTCCGCCTTATGCGCCGCCGTTCCAGGCTGCGGGGTCTGCACTATTATCCGGCACGGTTTTCAAAACAAAGGTGGAGTGAAAACCAATGCTAGCAGTGGTATGGCCCACGACAATTCAGTTGGAAGGATCGGAGAAGATTCTAGAAGAGCAATGCTTGTGTGTCGTGTAATCGCCGGAAAAGTGAAGCGTGTGGCGGAGGAAGGAGCGGCACCGGCGGCTACGTCGGAGGAGGAGAATGTGGCGTTTGATTCAGTTGCGGGAAATGCGGGAATTTACTCGAATCTCGAGGATCTAACCGTTTTCAATCCAAAGGCTATTCTTCCTTGTTTCGTAGTTATTTACAAGGTGCTTTCATAG 1278 0.4515 MARITNPLPEQSHPKKQLPKHNHKKQQQNHKQKQEQKQKQKPKEKPPSSWDQIKNILTCKQIEGSKVHDPSKPNNNNGYSKLSSSCSSICSFRDVVHGNTRVVHRSDNSSPESSILGQETSLLKRKPVTASSSSTTRSASCSGKSSNGGRNYTSSSSSSRGMQFRKLSGCYECHMIVDPSRLPIPRSTVCACDQCGEVFPKIESLELHQAVRHAVSELGPEDSGRNIVEIIFKSSWLKRESPMCKIERILKVHNTQRTIQRFEECRDSVKSRASNPTKKNPRCAADGNELLRFHSTTLSCALGARGSSALCAAVPGCGVCTIIRHGFQNKGGVKTNASSGMAHDNSVGRIGEDSRRAMLVCRVIAGKVKRVAEEGAAPAATSEEENVAFDSVAGNAGIYSNLEDLTVFNPKAILPCFVVIYKVLS 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00078 425 MobiDBLite consensus disorder prediction 1 53 - -
Trre1g00078 425 Gene3D - 214 423 - -
Trre1g00078 425 ProSiteProfiles Zinc finger C2H2 type domain profile. 190 218 IPR013087 -
Trre1g00078 425 MobiDBLite consensus disorder prediction 29 48 - -
Trre1g00078 425 MobiDBLite consensus disorder prediction 102 161 - -
Trre1g00078 425 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 48 421 - -
Trre1g00078 425 ProSitePatterns Zinc finger C2H2 type domain signature. 190 213 IPR013087 -
Trre1g00078 425 SUPERFAMILY ADP-ribosylation 215 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00078 Trre-Chr1 547026 551757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00078 1 424 C2H2 Transcription Factor Family AT1G75710 60.860 2.28e-176 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre1g00078 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00078 - - aprc:113874200 572.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00078 1 547026 551757 Trre1g00078 1 547026 551757 ECH