Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00059 ATGTTCTCAGCTATTCTTACCAATGAAGTTGCATGGTTTGATCTAGATGAGAACAATACTGGCTCATTAACAGCAATGTTAGCTGTGGATGCAACATTAGTAAGAAGTGCTCTAGCCAACAGACTCTCAACCATTGTGCAGAATGTAGCTCTCACTCTAACGGCATTTGTTATTTCCTTCACATTGAGTTGGAAACTAACATTAGTGGTTGCAGCTTGCTTTCCCCTTCTCATAGGAGCTTCCATCACAGAGTAA 255 0.4078 MFSAILTNEVAWFDLDENNTGSLTAMLAVDATLVRSALANRLSTIVQNVALTLTAFVISFTLSWKLTLVVAACFPLLIGASITE 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00059 84 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 1 81 IPR039421 -
Trre1g00059 84 Pfam ABC transporter transmembrane region 1 81 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre1g00059 84 Gene3D ABC transporter type 1, transmembrane domain 1 84 IPR036640 GO:0005524|GO:0016020
Trre1g00059 84 SUPERFAMILY ABC transporter transmembrane region 1 81 IPR036640 GO:0005524|GO:0016020
Trre1g00059 84 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 84 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00059 Trre-Chr1 415003 415587 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00059 3 77 Calmodulin-binding Proteins AT2G36910 29.333 1.13e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00059 K05658 - gmx:100788391 145.206