Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00056 ATGAATTCCCTTTCTTGTTCAACTCCTCTTCATAATAATCTTGCTTTGTTCCGTTTCATAATAATACTAATTGTTGTTTCATGCAAATTAACAAATGCTATTGTGAAATTGCCACCAAATGTTTCAGTTCCAGCAGTGTTGGTATTTGGAGATTCAATCGTGGATACTGGTAACAATAACAACAATTTGAGAACAACAGCTCGTTGCAATTTCCCACCTTATGGGAAAGATTTTAAAGGAGGGATTCCAACCGGAAGATTTAGTAATGGAAAAGTTCCCTCAGACCTCTTAGTTGAAGAACTAGGCATTAAAGAGCTTCTTCCAGCATACTTGGATCCAAATCTGCAGCCTAGTGATTTGCTTACTGGTGTCTGTTTTGCATCCGGTGGTGCTGGATATGATCCTTTGACATCTCAAACATCGTCAGCAATATCTTTATCTGGTCAACTAGACTTGTTCAAAGAATACATAGAAAAATTAAAAGTACTTGTTGGAGAGGACAGAACAAACTTCATCTTGGCAAATAGTGTTTTCCTTGTGGTATTAGGCAGCAATGACATTTCCAACACATACTTCTTATCTCGTATTAGACAAGTTCAGTATGATTTTCCATCTTATGCTGATTTTATGGTCAACTCAGCATCTAATTTCTTAAAGGAAATATATGATTTAGGTGCAAGGAGGATTGGAGTATTCAATACACCACCAATTGGTTGTTTGCCATTTCAGAGAACAGCAGCTGGAGGAATAGAAAGAAAAATTGTAGTGGAATACAATGAAGCAGTAGAATTATACAACACCAAATTGTCGAAGGGGTTGGCTTCTTTTAATCAGAACTATCCAAACAGCAGGATTGTTTACATTGATGTCTACAACCCTCTGCTTGATATCATTGTAAACTCCAATAAATACGGATATAAAGTGGAAGATAGAGGGTGCTGTGGCACGGGAATAATAGAGGTTGTGTTGTTATGCAACCATTTGGTTTCTACGTGTCCCAATGATATGGAGTTTGTCTTTTGGGATAGTTTTCATCCAACTGAAAGTGTTTACAAACGTCTCATAGCTCCTATTGTCCAAAAATACGTCAAAGATTTCCTGTGA 1104 0.3705 MNSLSCSTPLHNNLALFRFIIILIVVSCKLTNAIVKLPPNVSVPAVLVFGDSIVDTGNNNNNLRTTARCNFPPYGKDFKGGIPTGRFSNGKVPSDLLVEELGIKELLPAYLDPNLQPSDLLTGVCFASGGAGYDPLTSQTSSAISLSGQLDLFKEYIEKLKVLVGEDRTNFILANSVFLVVLGSNDISNTYFLSRIRQVQYDFPSYADFMVNSASNFLKEIYDLGARRIGVFNTPPIGCLPFQRTAAGGIERKIVVEYNEAVELYNTKLSKGLASFNQNYPNSRIVYIDVYNPLLDIIVNSNKYGYKVEDRGCCGTGIIEVVLLCNHLVSTCPNDMEFVFWDSFHPTESVYKRLIAPIVQKYVKDFL 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00056 367 Gene3D SGNH hydrolase 37 364 IPR036514 -
Trre1g00056 367 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 46 57 IPR008265 GO:0006629|GO:0016298
Trre1g00056 367 Pfam GDSL-like Lipase/Acylhydrolase 46 354 IPR001087 GO:0016788
Trre1g00056 367 PANTHER GDSL ESTERASE/LIPASE EXL3 23 356 - -
Trre1g00056 367 FunFam GDSL esterase/lipase APG 35 363 - -
Trre1g00056 367 SUPERFAMILY SGNH hydrolase 44 360 - -
Trre1g00056 367 CDD SGNH_plant_lipase_like 44 362 IPR035669 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00056 Trre-Chr1 387259 397610 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00056 40 360 Pollen Coat Proteome AT1G75910 41.975 3.14e-77 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00056 - - gmx:100776769 554.288