Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00054 ATGAAGTTCCCAACTTATAATAATTCTTTTTCCACTTCATTTTGCACTATACTTCTCCGTTTGACAATATTGTTAGTTTTTATTTTGTTCAAAACAAAAGCGGTTACGAAACTGCCACCAAATGTTTCAATTCCAGCCGTGTTTGTGTTCGGAGATTCAATCATGGATACCGGAAACAACAACCACATGATAACACCATCTCAGTGTAATTACCCTCCATATGGCAAAGATTTTGAGGGAGCAATTCCAACCGGAAGATTTAGCAACGGAAAGGTTCCGTCCGATCTTATAGTTGAAGAATTAGGCATTAAAGAATATCTGCCAGCATATTTGGATCCAAATCTCCAAACCAGTGATTTGCCTACAGGAGTCAACTTTGCATCCGGTGGTGCAGGATATGATCCTTTGACATCAAAATTAGGGGTAGCTATATCTATGTCTGGGCAGCTAGACTTATTCAAAGATTACATTGTGAAGCTTAAAGAACTTGTTGGTGAAGATAGAGCAAACTTCATCTTAGGCAATAGTCTTTTTCTTGTGGTCTTAGGCAGCAATGACATTTCCAACACATACTTCTTATCTCGTATTAGACAAGCCCAGTATGATTTTCCTACATACTCTGACATTTTAGTCAACTCAGCTTACAATTTCTACCAGGAAATATATGAACTAGGTGCAAGGAGGATTGGAGTATTTAATGCACCACCAATGGGGTGTGTACCATTTCAGAGAACAATGGCTGGTGGGATAGAAAGAAAATGTGTACAAGAGTACAATGATGCAGCTGTGTTCTTTAACAACAAGTTGTCAATAGGGATTGATTCTTTTCAGCAGAATTTTCCAAATAGCAGGATTGCTTACTTGGATGTTTACAACCCTCTACTTGATATCATTGTAAACAACCAAAAATATGGCTATAAGATTGGAGACAGAGGATGTTGTGGCACAGGGAAAATAGAAGTTACTTATTTATGCACCCATTTGGAAGGCATTTGTTCCAATGATTTGGATTATGTCTTTTGGGACAGTTTTCATCCTACTGAATCTGTTTACAGAAAACTTGTTACCCCTATTCTACACAAATACATGGACAAATTTATTTAG 1104 0.3741 MKFPTYNNSFSTSFCTILLRLTILLVFILFKTKAVTKLPPNVSIPAVFVFGDSIMDTGNNNHMITPSQCNYPPYGKDFEGAIPTGRFSNGKVPSDLIVEELGIKEYLPAYLDPNLQTSDLPTGVNFASGGAGYDPLTSKLGVAISMSGQLDLFKDYIVKLKELVGEDRANFILGNSLFLVVLGSNDISNTYFLSRIRQAQYDFPTYSDILVNSAYNFYQEIYELGARRIGVFNAPPMGCVPFQRTMAGGIERKCVQEYNDAAVFFNNKLSIGIDSFQQNFPNSRIAYLDVYNPLLDIIVNNQKYGYKIGDRGCCGTGKIEVTYLCTHLEGICSNDLDYVFWDSFHPTESVYRKLVTPILHKYMDKFI 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00054 367 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 47 58 IPR008265 GO:0006629|GO:0016298
Trre1g00054 367 CDD SGNH_plant_lipase_like 45 362 IPR035669 -
Trre1g00054 367 PANTHER GDSL ESTERASE/LIPASE EXL3 27 356 - -
Trre1g00054 367 Gene3D SGNH hydrolase 35 362 IPR036514 -
Trre1g00054 367 Pfam GDSL-like Lipase/Acylhydrolase 47 355 IPR001087 GO:0016788
Trre1g00054 367 SUPERFAMILY SGNH hydrolase 46 360 - -
Trre1g00054 367 FunFam GDSL esterase/lipase APG 36 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00054 Trre-Chr1 381653 384800 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00054 23 360 Pollen Coat Proteome AT1G75910 39.766 1.47e-72 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00054 - - gmx:100786548 520.776