Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00053 ATGGATACGGGAAATAATAATAACATGACAACACCATCTAGGTGCAATTACCCTCCATATGGCAAAGATTTTCAAGGAGGAATTCCAACTGGGAGATTTAGCAACGGAAAGGTTCCATCAGATCTTATAGTTGAAGAGTTGAGCATTAAAGAGTATTTGCCAGCATATTTGGATCCAAATCTCCATCCTAGTGAATTGGTCACCGGCGTTAACTTTGCATCCGGTGGTGCAGGATATGATCCTTTGACGTCAAAATTAGAGGCAGCTATATCTATGTCTGGGCAGCTAGACTTATTCAAAGATTACATTGTGAAGCTTAAAGAACTTGTTGGTGAAGATAGAACAAACTTTATCTTAGCCAATAGTATATTTTTTGTGGTATTAGGAAGCAATGATATTTCTAACACATACTACTTATCCCATTTGAGACAAGTGCACTATGATCTTCCTACATACTCTGACCTTTTAGTCAACTCAGCTTATAATTTCTACAAGGAAATATATGAATTAGGTGTAAGGAGGATTGGAGTATTCAATGTACCACCAATTGGGTGTGTGCCTTTTCAGAGAACAATGGCTGGTGGAATAACAAGAAAATGTGTGCAATTGTATGATGATGCAGTTGTGTTCTTTAACAACAAATTATCAATGGGGATTGATTCCTTTAAGCAGAACTTCCCAAGTAGCAACATTGTTTACATGGATATTTACAACCCTATACTTGATATCATTGTCAACTATAAAAAATATGGATATAAAATTGGAGACAGAGGGTGTTGTGGCACAGGCAAAATAGAAGTTACTTATTTGTGCAACCATTTGGATCCCATTTGTCCCAACGATTTGGATTATGTCTTTTGGGATAGTTTTCATCCTACTGAATCCGCTTACAGAAAACTTGTTGGTCCTATTCTACAAAAATACATGCACAAGTTACTGTGA 942 0.3662 MDTGNNNNMTTPSRCNYPPYGKDFQGGIPTGRFSNGKVPSDLIVEELSIKEYLPAYLDPNLHPSELVTGVNFASGGAGYDPLTSKLEAAISMSGQLDLFKDYIVKLKELVGEDRTNFILANSIFFVVLGSNDISNTYYLSHLRQVHYDLPTYSDLLVNSAYNFYKEIYELGVRRIGVFNVPPIGCVPFQRTMAGGITRKCVQLYDDAVVFFNNKLSMGIDSFKQNFPSSNIVYMDIYNPILDIIVNYKKYGYKIGDRGCCGTGKIEVTYLCNHLDPICPNDLDYVFWDSFHPTESAYRKLVGPILQKYMHKLL 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00053 313 Gene3D SGNH hydrolase 1 309 IPR036514 -
Trre1g00053 313 CDD SGNH_plant_lipase_like 2 308 IPR035669 -
Trre1g00053 313 PANTHER GDSL ESTERASE/LIPASE EXL3 1 301 - -
Trre1g00053 313 FunFam GDSL esterase/lipase APG 1 309 - -
Trre1g00053 313 SUPERFAMILY SGNH hydrolase 121 305 - -
Trre1g00053 313 Pfam GDSL-like Lipase/Acylhydrolase 2 300 IPR001087 GO:0016788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00053 Trre-Chr1 373418 375363 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00053 1 312 Pollen Coat Proteome AT1G75910 38.413 6.70e-67 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00053 - - gmx:100777186 477.633